Variant report

Variant	rs9429734
Chromosome Location	chr1:114628196-114628197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:114614196..114617663-chr1:114624428..114628635,5	MCF-7	breast:
2	chr1:114623233..114626213-chr1:114628057..114630881,2	MCF-7	breast:
3	chr1:114628179..114629979-chr1:114633594..114635388,2	K562	blood:
4	chr1:114621614..114625641-chr1:114627637..114630642,5	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10858028	0.89[EUR][1000 genomes]
rs11102727	0.87[EUR][1000 genomes]
rs1330700	0.85[EUR][1000 genomes]
rs2774291	0.96[EUR][1000 genomes]
rs2938353	0.84[EUR][1000 genomes]
rs3007010	0.81[EUR][1000 genomes]
rs3007012	0.83[EUR][1000 genomes]
rs3007013	0.83[EUR][1000 genomes]
rs4240537	0.88[EUR][1000 genomes]
rs514647	0.85[EUR][1000 genomes]
rs529171	0.85[EUR][1000 genomes]
rs548040	0.84[EUR][1000 genomes]
rs6537808	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	esv1849780	chr1:114577463-114663164	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114619200-114640200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:114623600-114629800	Weak transcription	Pancreas	Pancrea
3	chr1:114624800-114630800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:114625000-114631000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:114625400-114631200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:114625400-114631800	Weak transcription	Brain Germinal Matrix	brain
7	chr1:114625400-114639600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr1:114625400-114639800	Weak transcription	Right Atrium	heart
9	chr1:114625600-114631000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr1:114625600-114631600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:114626000-114629200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr1:114626000-114630000	Weak transcription	Fetal Intestine Small	intestine
13	chr1:114626000-114630200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:114626000-114630800	Weak transcription	Fetal Lung	lung
15	chr1:114626400-114630000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr1:114626400-114630600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr1:114626400-114630800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr1:114626400-114630800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr1:114626400-114630800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr1:114626400-114631600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr1:114626600-114630400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr1:114626600-114630800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr1:114626600-114630800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr1:114626600-114631000	Weak transcription	HMEC	breast

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