Variant report

Variant	rs10861030
Chromosome Location	chr12:103892944-103892945
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:29)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:29 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFATC1	chr12:103892735-103893161	GM12878	blood:	n/a	n/a
2	EP300	chr12:103892903-103893103	GM12878	blood:	n/a	n/a
3	ATF2	chr12:103892729-103893271	GM12878	blood:	n/a	n/a
4	PML	chr12:103892731-103893276	GM12878	blood:	n/a	n/a
5	MTA3	chr12:103892733-103893154	GM12878	blood:	n/a	n/a
6	RCOR1	chr12:103892901-103893086	GM12878	blood:	n/a	n/a
7	FOXM1	chr12:103892641-103893243	GM12878	blood:	n/a	n/a
8	EP300	chr12:103892803-103893163	GM12878	blood:	n/a	n/a
9	STAT5A	chr12:103892694-103893080	GM12878	blood:	n/a	n/a
10	ATF2	chr12:103892699-103893206	GM12878	blood:	n/a	n/a
11	POU2F2	chr12:103892835-103893117	GM12891	blood:	n/a	n/a
12	TBL1XR1	chr12:103892828-103893043	GM12878	blood:	n/a	n/a
13	BHLHE40	chr12:103892833-103893213	GM12878	blood:	n/a	n/a
14	RUNX3	chr12:103892669-103893290	GM12878	blood:	n/a	n/a
15	NFIC	chr12:103892667-103893794	GM12878	blood:	n/a	n/a
16	BATF	chr12:103892688-103893189	GM12878	blood:	n/a	n/a
17	RUNX3	chr12:103892775-103893121	GM12878	blood:	n/a	n/a
18	STAT3	chr12:103892905-103893152	GM12878	blood:	n/a	n/a
19	SRF	chr12:103892839-103893128	GM12878	blood:	n/a	n/a
20	CEBPB	chr12:103892718-103893310	GM12878	blood:	n/a	n/a
21	BCL3	chr12:103892702-103893134	GM12878	blood:	n/a	n/a
22	ZNF143	chr12:103892913-103893046	GM12878	blood:	n/a	n/a
23	MTA3	chr12:103892705-103893183	GM12878	blood:	n/a	n/a
24	IRF4	chr12:103892724-103893231	GM12878	blood:	n/a	n/a
25	BATF	chr12:103892749-103893100	GM12878	blood:	n/a	n/a
26	EBF1	chr12:103892823-103893132	GM12878	blood:	n/a	n/a
27	EP300	chr12:103892821-103893179	GM12878	blood:	n/a	n/a
28	CHD2	chr12:103892887-103893126	GM12878	blood:	n/a	n/a
29	BCL11A	chr12:103892798-103893226	GM12878	blood:	n/a	n/a

No data

Variant related genes	Relation type
C12orf42	TF binding region
ENSG00000257415	TF binding region

rs_ID	r²[population]
rs10861023	0.85[EUR][1000 genomes]
rs10861024	0.85[EUR][1000 genomes]
rs10861027	0.83[EUR][1000 genomes]
rs1316751	0.83[EUR][1000 genomes]
rs1319091	0.85[EUR][1000 genomes]
rs2374049	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2374050	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2374072	0.83[ASN][1000 genomes]
rs2888731	0.80[EUR][1000 genomes]
rs4015525	0.82[EUR][1000 genomes]
rs4506750	0.82[EUR][1000 genomes]
rs7307779	0.81[EUR][1000 genomes]
rs7964462	0.82[EUR][1000 genomes]
rs7977907	0.83[EUR][1000 genomes]

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103890000-103893200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:103890200-103893000	Weak transcription	GM12878-XiMat	blood
3	chr12:103890200-103893200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:103890200-103893200	Weak transcription	NHEK	skin
5	chr12:103890200-103894000	Weak transcription	Fetal Brain Female	brain
6	chr12:103890200-103894200	Weak transcription	Brain Germinal Matrix	brain
7	chr12:103890400-103893200	Weak transcription	HMEC	breast
8	chr12:103890400-103895800	Weak transcription	Thymus	Thymus
9	chr12:103891200-103893000	Weak transcription	A549	lung
10	chr12:103891400-103893000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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