Variant report

Variant	rs4506750
Chromosome Location	chr12:103864665-103864666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103863978..103866213-chr12:103870731..103872426,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10466955	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10467023	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10745966	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10745969	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10778245	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10860995	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs10861006	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10861012	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10861023	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10861024	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10861027	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10861030	0.82[EUR][1000 genomes]
rs11111565	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1112754	0.86[ASN][1000 genomes]
rs1316751	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1319091	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1320348	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2374050	0.82[EUR][1000 genomes]
rs2374063	0.83[EUR][1000 genomes]
rs2374067	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2374075	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2374076	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2374077	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2888730	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs2888731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3953541	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4015523	0.94[CEU][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4015525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4015527	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4015536	0.81[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4433658	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4488299	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4764960	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6539076	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7295666	0.84[EUR][1000 genomes]
rs7295986	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs7296215	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs7299547	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7302598	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7307779	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7308343	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs7312427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7316757	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7958520	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs7959115	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs7960043	0.86[EUR][1000 genomes]
rs7964462	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7969700	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7977907	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9669745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103852200-103865400	Weak transcription	Primary T cells from cord blood	blood
2	chr12:103863800-103865400	Enhancers	HMEC	breast
3	chr12:103863800-103865600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr12:103863800-103876200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr12:103864200-103865000	Enhancers	NHEK	skin
6	chr12:103864200-103865600	Enhancers	Primary B cells from peripheral blood	blood
7	chr12:103864600-103887400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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