Variant report

Variant	rs10745969
Chromosome Location	chr12:103839066-103839067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10161218	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs10466955	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10467022	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs10467023	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10745966	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10778245	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10860995	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs10861006	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10861012	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10861023	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10861024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10861027	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11111565	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1112754	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1316751	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1319091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1320348	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2374050	0.82[AMR][1000 genomes]
rs2374063	0.90[EUR][1000 genomes]
rs2374067	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2374075	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2374076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2374077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2888730	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2888731	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3953541	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4015523	0.94[CEU][hapmap];0.96[EUR][1000 genomes]
rs4015525	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4015527	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4015536	0.88[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4433658	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4488299	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4506750	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4764960	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6539076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7295666	0.82[CEU][hapmap];0.92[EUR][1000 genomes]
rs7295986	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs7296215	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs7299547	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7301105	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs7302598	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7307779	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7308343	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs7312427	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7316757	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7958520	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7959115	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs7960043	0.90[EUR][1000 genomes]
rs7964462	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7965797	0.82[EUR][1000 genomes]
rs7969700	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7977907	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9669745	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3338592	chr12:103817534-103849094	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3498252	chr12:103838998-103847126	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3498263	chr12:103839023-103847123	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3498274	chr12:103839023-103847123	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103838200-103840000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr12:103838400-103840000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr12:103838400-103840400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr12:103838800-103839200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr12:103838800-103839400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr12:103838800-103839600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr12:103838800-103839600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:103838800-103839800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr12:103838800-103840200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:103839000-103839200	Enhancers	Primary B cells from cord blood	blood
11	chr12:103839000-103839400	Enhancers	H1 Cell Line	embryonic stem cell

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