Variant report

Variant	rs1319091
Chromosome Location	chr12:103884763-103884764
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10161218	0.81[CEU][hapmap]
rs10466955	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10467022	0.80[CEU][hapmap];0.81[CHB][hapmap]
rs10467023	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10745966	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs10745969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10778245	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10860995	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs10861006	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861012	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861023	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10861024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10861027	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10861030	0.85[EUR][1000 genomes]
rs11111565	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1316751	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1320348	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2374049	0.82[EUR][1000 genomes]
rs2374050	0.82[EUR][1000 genomes]
rs2374063	0.83[EUR][1000 genomes]
rs2374067	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2374075	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2374076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2374077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2888730	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs2888731	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3953541	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4015523	0.93[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4015525	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4015527	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4015536	0.93[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4433658	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4488299	0.84[EUR][1000 genomes]
rs4506750	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4764960	0.86[EUR][1000 genomes]
rs6539076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7295666	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs7295986	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs7296215	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs7299547	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7301105	0.81[CEU][hapmap]
rs7302598	0.88[EUR][1000 genomes]
rs7307779	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7308343	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs7312427	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7316757	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7958520	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7959115	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs7960043	0.86[EUR][1000 genomes]
rs7964462	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7969700	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7977907	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9669745	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103864600-103887400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:103883600-103887400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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