Variant report

Variant	rs10861012
Chromosome Location	chr12:103835201-103835202
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10161218	0.82[EUR][1000 genomes]
rs10466955	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10467023	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10745966	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10745969	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10778245	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10860995	0.93[EUR][1000 genomes]
rs10861006	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861023	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10861024	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10861027	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11111565	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1112754	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1316751	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1319091	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1320348	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2374063	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2374067	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2374075	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2374076	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2374077	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2888730	0.89[EUR][1000 genomes]
rs2888731	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3953541	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4015523	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4015525	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4015527	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4015536	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4433658	0.89[EUR][1000 genomes]
rs4488299	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4506750	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4764960	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6539076	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7295666	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7295986	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7296215	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7299547	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7301105	0.83[EUR][1000 genomes]
rs7302598	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7307779	0.89[EUR][1000 genomes]
rs7308343	0.91[EUR][1000 genomes]
rs7312427	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7316757	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7958520	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7959115	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7960043	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7964462	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7965797	0.82[EUR][1000 genomes]
rs7969700	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7977907	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3338592	chr12:103817534-103849094	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103834400-103835400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
2	chr12:103834400-103835400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
3	chr12:103834400-103835400	Active TSS	Primary T killer memory cells from peripheral blood	blood
4	chr12:103834400-103835400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
5	chr12:103834400-103835400	Flanking Active TSS	GM12878-XiMat	blood
6	chr12:103834400-103835600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
7	chr12:103834400-103835600	Flanking Active TSS	Dnd41	blood
8	chr12:103834400-103836200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr12:103834400-103836400	Enhancers	Thymus	Thymus
10	chr12:103834400-103837400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr12:103834600-103835600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
12	chr12:103834600-103835800	Active TSS	Primary T helper naive cells from peripheral blood	blood
13	chr12:103834800-103835400	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr12:103834800-103835600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
15	chr12:103835000-103835400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr12:103835000-103835600	Active TSS	Primary T cells from cord blood	blood
17	chr12:103835000-103835600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr12:103835000-103836400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr12:103835200-103835400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
20	chr12:103835200-103835400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
21	chr12:103835200-103835400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
22	chr12:103835200-103835600	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr12:103835200-103835600	Active TSS	Primary B cells from cord blood	blood
24	chr12:103835200-103835600	Flanking Active TSS	Primary B cells from peripheral blood	blood
25	chr12:103835200-103835600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr12:103835200-103836200	Enhancers	Primary hematopoietic stem cells	blood
27	chr12:103835200-103836400	Enhancers	Fetal Thymus	thymus
28	chr12:103835200-103837400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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