Variant report

Variant	rs10161218
Chromosome Location	chr12:103788301-103788302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10466955	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs10467022	0.84[GIH][hapmap]
rs10467023	0.86[EUR][1000 genomes]
rs10745966	0.88[CEU][hapmap];0.92[GIH][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes]
rs10745969	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs10778245	0.88[CEU][hapmap];0.92[GIH][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes]
rs10860995	0.88[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];0.92[GIH][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs10861006	0.86[EUR][1000 genomes]
rs10861012	0.82[EUR][1000 genomes]
rs10861024	0.80[CEU][hapmap]
rs11111565	0.86[EUR][1000 genomes]
rs11611044	0.82[AFR][1000 genomes]
rs11615621	0.80[LWK][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs1316751	0.83[CEU][hapmap];0.92[GIH][hapmap]
rs1319091	0.81[CEU][hapmap]
rs1320348	0.85[EUR][1000 genomes]
rs2374049	0.83[GIH][hapmap];0.85[TSI][hapmap]
rs2374063	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2374067	0.86[EUR][1000 genomes]
rs2374075	0.82[EUR][1000 genomes]
rs2374076	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs2374077	0.83[CEU][hapmap];0.83[GIH][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes]
rs2888730	0.85[CEU][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2888731	0.86[MEX][hapmap];0.85[TSI][hapmap]
rs3953541	0.85[EUR][1000 genomes]
rs4015525	0.86[MEX][hapmap];0.85[TSI][hapmap]
rs4015527	0.85[EUR][1000 genomes]
rs4015536	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs4433658	0.82[CEU][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4488299	0.82[EUR][1000 genomes]
rs4764960	0.83[EUR][1000 genomes]
rs6539076	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs7295666	0.90[EUR][1000 genomes]
rs7295986	0.88[CEU][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7296215	0.88[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];0.94[GIH][hapmap];0.89[MKK][hapmap];0.89[TSI][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7299547	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs7301105	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7302598	0.86[EUR][1000 genomes]
rs7308343	0.88[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];0.94[GIH][hapmap];0.86[MEX][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes]
rs7312427	0.92[GIH][hapmap]
rs7316757	0.86[EUR][1000 genomes]
rs7958520	0.83[CEU][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs7959115	0.88[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.86[MEX][hapmap];0.87[MKK][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes]
rs7960043	0.88[EUR][1000 genomes]
rs7965797	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7969700	0.88[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455703	chr12:103692799-103818049	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv560037	chr12:103692799-103818049	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv899477	chr12:103747515-103817326	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv899478	chr12:103747515-103834275	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1795884	chr12:103772579-103788340	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103787000-103790400	Weak transcription	Primary B cells from cord blood	blood
2	chr12:103787200-103789800	Weak transcription	Primary B cells from peripheral blood	blood

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