Variant report

Variant	rs10861037
Chromosome Location	chr12:103951541-103951542
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103945611..103948052-chr12:103948971..103952595,3	MCF-7	breast:
2	chr12:103949935..103952101-chr12:104021910..104024698,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STAB2-1	chr12:103951190-103953587	XLOC_009859
2	lnc-STAB2-1	chr12:103951190-103953593	ENSG00000257762

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10507167	1.00[CEU][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes]
rs10861038	1.00[ASN][1000 genomes]
rs1104981	0.89[ASN][1000 genomes]
rs11111649	0.98[ASN][1000 genomes]
rs11111659	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11111661	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11111662	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11111663	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11111664	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11111665	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11111667	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11111668	1.00[CEU][hapmap];0.95[AMR][1000 genomes]
rs11111670	1.00[CEU][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes]
rs11532373	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11831074	0.98[ASN][1000 genomes]
rs11835633	0.98[ASN][1000 genomes]
rs12229297	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12578790	0.91[AMR][1000 genomes]
rs12579074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17034112	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17034125	1.00[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17034140	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs4321042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103932600-103952800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:103948200-103953400	Weak transcription	NHDF-Ad	bronchial
3	chr12:103950200-103955600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr12:103950600-103952800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:103950800-103951600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr12:103951200-103956600	Enhancers	Placenta	Placenta
7	chr12:103951400-103951600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr12:103951400-103951600	Enhancers	Fetal Muscle Leg	muscle
9	chr12:103951400-103951600	ZNF genes & repeats	NHEK	skin
10	chr12:103951400-103951800	Enhancers	Colon Smooth Muscle	Colon

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