Variant report
| Variant | rs11111667 |
|---|---|
| Chromosome Location | chr12:103979961-103979962 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:18)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:18 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chr12:103979940-103980090 | HCM | heart: | n/a | n/a |
| 2 | CTCF | chr12:103979688-103980421 | A549 | lung: | n/a | n/a |
| 3 | CTCF | chr12:103979937-103980345 | HCT-116 | colon: | n/a | n/a |
| 4 | CTCF | chr12:103979940-103980090 | A549 | lung: | n/a | n/a |
| 5 | CTCF | chr12:103979950-103980282 | GM12878 | blood: | n/a | n/a |
| 6 | CTCF | chr12:103979960-103980110 | GM06990 | blood: | n/a | n/a |
| 7 | CTCF | chr12:103979960-103980110 | NHDF-neo | bronchial: | n/a | n/a |
| 8 | RAD21 | chr12:103979954-103980291 | Hela-S3 | cervix: | n/a | n/a |
| 9 | RAD21 | chr12:103979939-103980221 | GM12878 | blood: | n/a | n/a |
| 10 | CTCF | chr12:103979850-103980312 | HCT-116 | colon: | n/a | n/a |
| 11 | CTCF | chr12:103979847-103980405 | MCF-7 | breast: | n/a | n/a |
| 12 | RAD21 | chr12:103979941-103980352 | MCF-7 | breast: | n/a | n/a |
| 13 | CTCF | chr12:103979940-103980090 | HRE | kidney: | n/a | n/a |
| 14 | SMC3 | chr12:103979960-103980272 | Hela-S3 | cervix: | n/a | n/a |
| 15 | RAD21 | chr12:103979921-103980345 | A549 | lung: | n/a | n/a |
| 16 | RAD21 | chr12:103979907-103980423 | HCT-116 | colon: | n/a | n/a |
| 17 | RAD21 | chr12:103979959-103980254 | IMR90 | lung: | n/a | n/a |
| 18 | CTCF | chr12:103979960-103980110 | AG04450 | lung: | n/a | n/a |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| STAB2 | TF binding region |
| ENSG00000212594 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10507167 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1070073 | 0.87[ASN][1000 genomes] |
| rs10861037 | 0.91[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10861038 | 0.85[ASN][1000 genomes] |
| rs1104981 | 0.96[ASN][1000 genomes] |
| rs11111649 | 0.84[ASN][1000 genomes] |
| rs11111659 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11111661 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11111662 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11111663 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11111664 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11111665 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11111668 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11111670 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11532373 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11831074 | 0.84[ASN][1000 genomes] |
| rs11835633 | 0.84[ASN][1000 genomes] |
| rs12229297 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12578790 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12579074 | 0.91[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs17034112 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17034125 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17034140 | 0.96[ASN][1000 genomes] |
| rs2723889 | 0.87[ASN][1000 genomes] |
| rs4321042 | 0.91[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
