Variant report

Variant	rs1104981
Chromosome Location	chr12:103966480-103966481
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103954527..103956110-chr12:103966376..103969206,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10450733	0.94[AFR][1000 genomes]
rs10507167	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1070073	0.82[ASN][1000 genomes]
rs10861037	0.89[ASN][1000 genomes]
rs10861038	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11111649	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11111659	1.00[ASN][1000 genomes]
rs11111661	0.96[ASN][1000 genomes]
rs11111662	0.96[ASN][1000 genomes]
rs11111663	1.00[CEU][hapmap];0.96[ASN][1000 genomes]
rs11111664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11111665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11111667	0.96[ASN][1000 genomes]
rs11111668	1.00[CEU][hapmap];0.86[ASN][1000 genomes]
rs11111670	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11532373	1.00[ASN][1000 genomes]
rs11831074	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11835633	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11837295	0.94[AFR][1000 genomes]
rs12229297	1.00[ASN][1000 genomes]
rs12578790	0.85[ASN][1000 genomes]
rs12579074	0.88[ASN][1000 genomes]
rs17034112	0.96[ASN][1000 genomes]
rs17034125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17034140	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2723889	0.82[ASN][1000 genomes]
rs4321042	0.88[ASN][1000 genomes]
rs59578983	0.84[AFR][1000 genomes]
rs73391981	0.84[AFR][1000 genomes]
rs7969095	0.91[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1104981	STAB2	cis	multi-tissue	Pritchard

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103961000-103968800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:103965200-103967200	Enhancers	HSMMtube	muscle
3	chr12:103965400-103966800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr12:103965400-103968000	Weak transcription	Fetal Muscle Leg	muscle
5	chr12:103965400-103968800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr12:103965400-103968800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:103965400-103969000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr12:103965400-103969000	Weak transcription	Brain Anterior Caudate	brain
9	chr12:103965400-103969200	Weak transcription	Gastric	stomach
10	chr12:103965400-103969400	Weak transcription	Left Ventricle	heart
11	chr12:103965400-103969400	Weak transcription	Right Ventricle	heart
12	chr12:103965600-103967200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr12:103965600-103969000	Weak transcription	Brain Substantia Nigra	brain
14	chr12:103965600-103969000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr12:103965600-103969200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr12:103965600-103969200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr12:103965600-103969200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr12:103965600-103969200	Weak transcription	Fetal Brain Female	brain
19	chr12:103965600-103969200	Weak transcription	Pancreas	Pancrea
20	chr12:103965600-103969200	Weak transcription	HMEC	breast
21	chr12:103965600-103969400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr12:103965800-103969000	Weak transcription	Brain Germinal Matrix	brain
23	chr12:103965800-103969000	Weak transcription	Fetal Intestine Large	intestine
24	chr12:103965800-103969200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr12:103966000-103968400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr12:103966000-103968600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr12:103966000-103968600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr12:103966000-103968600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr12:103966000-103968800	Weak transcription	Brain Hippocampus Middle	brain
30	chr12:103966000-103969000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr12:103966000-103969200	Weak transcription	HSMM	muscle
32	chr12:103966000-103969200	Weak transcription	NHEK	skin
33	chr12:103966400-103969000	Weak transcription	Fetal Heart	heart

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