Variant report

Variant	rs10861575
Chromosome Location	chr12:106703244-106703245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:106639790..106642041-chr12:106701252..106704005,2	MCF-7	breast:
2	chr12:106640546..106642318-chr12:106700436..106703373,2	MCF-7	breast:
3	chr12:106702411..106704498-chr12:106712382..106715233,2	MCF-7	breast:
4	chr12:106695771..106699164-chr12:106702286..106705903,4	MCF-7	breast:
5	chr12:106702332..106705021-chr12:106709176..106711287,2	MCF-7	breast:
6	chr12:106700302..106702349-chr12:106702837..106704889,2	K562	blood:
7	chr12:106686272..106688271-chr12:106702208..106703818,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000258355	Chromatin interaction
ENSG00000136026	Chromatin interaction
ENSG00000166046	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10861572	0.95[ASN][1000 genomes]
rs10861574	0.99[ASN][1000 genomes]
rs11112931	0.94[ASN][1000 genomes]
rs1532587	0.83[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.93[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2077730	0.92[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2249837	0.88[CEU][hapmap];0.82[CHB][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2250108	0.92[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2250705	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2250708	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2250709	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2250713	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2250936	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2264757	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2264762	0.92[CEU][hapmap];0.83[CHB][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2264814	0.92[CEU][hapmap];0.83[CHB][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2264815	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2264816	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2279759	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.81[MEX][hapmap];0.99[ASN][1000 genomes]
rs2465356	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35816179	0.95[ASN][1000 genomes]
rs36139467	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7314289	0.95[ASN][1000 genomes]
rs904614	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10861575	NUAK1	cis	cerebellum	SCAN

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106697800-106703400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr12:106697800-106703600	Enhancers	Fetal Intestine Large	intestine
3	chr12:106698000-106704000	Weak transcription	GM12878-XiMat	blood
4	chr12:106698000-106705600	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr12:106698000-106708400	Weak transcription	Small Intestine	intestine
6	chr12:106698000-106709000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr12:106698200-106703800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr12:106698200-106703800	Weak transcription	Fetal Stomach	stomach
9	chr12:106698200-106704200	Enhancers	Colon Smooth Muscle	Colon
10	chr12:106698200-106706000	Weak transcription	Placenta	Placenta
11	chr12:106698200-106708000	Weak transcription	Liver	Liver
12	chr12:106698400-106708000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr12:106698400-106709800	Weak transcription	Fetal Lung	lung
14	chr12:106698600-106709600	Weak transcription	Brain Germinal Matrix	brain
15	chr12:106698800-106705400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr12:106698800-106708400	Weak transcription	Thymus	Thymus
17	chr12:106698800-106709200	Weak transcription	Fetal Thymus	thymus
18	chr12:106699000-106703800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr12:106699000-106708200	Weak transcription	Ovary	ovary
20	chr12:106699000-106708400	Weak transcription	Fetal Brain Female	brain
21	chr12:106699400-106704600	Weak transcription	Colonic Mucosa	Colon
22	chr12:106699400-106705400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr12:106699600-106704600	Enhancers	Brain Angular Gyrus	brain
24	chr12:106699600-106705400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
25	chr12:106699600-106705600	Enhancers	Brain Cingulate Gyrus	brain
26	chr12:106699600-106713800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr12:106699800-106703400	Weak transcription	Gastric	stomach
28	chr12:106699800-106703800	Weak transcription	Aorta	Aorta
29	chr12:106699800-106704600	Enhancers	Brain Substantia Nigra	brain
30	chr12:106699800-106705000	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr12:106699800-106708800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr12:106699800-106713200	Weak transcription	Esophagus	oesophagus
33	chr12:106699800-106718800	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr12:106700400-106703800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr12:106700600-106703400	Enhancers	Fetal Intestine Small	intestine
36	chr12:106700600-106705200	Enhancers	Brain Anterior Caudate	brain
37	chr12:106700600-106736000	Weak transcription	Stomach Mucosa	stomach
38	chr12:106700800-106703600	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr12:106700800-106705600	Enhancers	Brain Hippocampus Middle	brain
40	chr12:106701000-106703400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr12:106701200-106703800	Strong transcription	Primary B cells from peripheral blood	blood
42	chr12:106701200-106708000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr12:106701400-106704600	Weak transcription	Duodenum Mucosa	Duodenum
44	chr12:106701400-106708800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr12:106701400-106709400	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr12:106701600-106703800	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr12:106701800-106704000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr12:106701800-106705000	Enhancers	Fetal Muscle Leg	muscle
49	chr12:106701800-106705200	Enhancers	Psoas Muscle	Psoas
50	chr12:106702000-106704200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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