Variant report

Variant	rs36139467
Chromosome Location	chr12:106707334-106707335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106696710..106704900-chr12:106706895..106711407,9	MCF-7	breast:
2	chr12:106698636..106700298-chr12:106705423..106707807,2	K562	blood:

Variant related genes	Relation type
ENSG00000136026	Chromatin interaction
ENSG00000166046	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10861572	0.95[ASN][1000 genomes]
rs10861574	0.99[ASN][1000 genomes]
rs10861575	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112931	0.94[ASN][1000 genomes]
rs1532587	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2077730	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2249837	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2250108	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2250705	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2250708	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2250709	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2250713	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2250936	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2264757	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2264762	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2264814	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2264815	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2264816	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2279759	0.99[ASN][1000 genomes]
rs2465356	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35816179	0.95[ASN][1000 genomes]
rs7314289	0.95[ASN][1000 genomes]
rs904614	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106698000-106708400	Weak transcription	Small Intestine	intestine
2	chr12:106698000-106709000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr12:106698200-106708000	Weak transcription	Liver	Liver
4	chr12:106698400-106708000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr12:106698400-106709800	Weak transcription	Fetal Lung	lung
6	chr12:106698600-106709600	Weak transcription	Brain Germinal Matrix	brain
7	chr12:106698800-106708400	Weak transcription	Thymus	Thymus
8	chr12:106698800-106709200	Weak transcription	Fetal Thymus	thymus
9	chr12:106699000-106708200	Weak transcription	Ovary	ovary
10	chr12:106699000-106708400	Weak transcription	Fetal Brain Female	brain
11	chr12:106699600-106713800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr12:106699800-106708800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr12:106699800-106713200	Weak transcription	Esophagus	oesophagus
14	chr12:106699800-106718800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr12:106700600-106736000	Weak transcription	Stomach Mucosa	stomach
16	chr12:106701200-106708000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr12:106701400-106708800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr12:106701400-106709400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr12:106703000-106708000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr12:106703000-106708000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr12:106703000-106708000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr12:106703000-106722800	Weak transcription	Fetal Brain Male	brain
23	chr12:106703600-106714400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr12:106703600-106715800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr12:106703800-106718600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr12:106704000-106708600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr12:106704000-106716000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr12:106704200-106708200	Weak transcription	Colon Smooth Muscle	Colon
29	chr12:106704200-106708400	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr12:106704200-106711400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr12:106704200-106715000	Weak transcription	HepG2	liver
32	chr12:106704200-106715400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr12:106704200-106715400	Weak transcription	NHDF-Ad	bronchial
34	chr12:106704200-106716800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr12:106704200-106729400	Weak transcription	NHLF	lung
36	chr12:106704200-106729800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr12:106704400-106708000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr12:106704400-106708200	Weak transcription	Osteobl	bone
39	chr12:106704400-106708400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr12:106704400-106712200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr12:106704600-106707800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr12:106704600-106717600	Weak transcription	HSMM	muscle
43	chr12:106704600-106724400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr12:106704800-106708000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr12:106704800-106709400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr12:106704800-106715200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr12:106704800-106726800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr12:106704800-106738800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr12:106705000-106708000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr12:106705000-106708000	Weak transcription	Lung	lung

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