Variant report

Variant	rs35816179
Chromosome Location	chr12:106693710-106693711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106637683..106639757-chr12:106691523..106693781,3	MCF-7	breast:
2	chr12:106693434..106696954-chr12:106697519..106701215,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136026	Chromatin interaction
ENSG00000166046	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10861572	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10861574	0.96[ASN][1000 genomes]
rs10861575	0.95[ASN][1000 genomes]
rs11112931	0.95[ASN][1000 genomes]
rs1532587	0.96[ASN][1000 genomes]
rs2077730	0.83[ASN][1000 genomes]
rs2249837	0.81[ASN][1000 genomes]
rs2250108	0.83[ASN][1000 genomes]
rs2250705	0.94[ASN][1000 genomes]
rs2250708	0.93[ASN][1000 genomes]
rs2250709	0.95[ASN][1000 genomes]
rs2250713	0.94[ASN][1000 genomes]
rs2250936	0.96[ASN][1000 genomes]
rs2264757	0.96[ASN][1000 genomes]
rs2264762	0.81[ASN][1000 genomes]
rs2264814	0.81[ASN][1000 genomes]
rs2264815	0.83[ASN][1000 genomes]
rs2264816	0.83[ASN][1000 genomes]
rs2279759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2465356	0.94[ASN][1000 genomes]
rs36139467	0.95[ASN][1000 genomes]
rs7314289	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs904614	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794382	chr12:106679812-106699151	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106680000-106695200	Weak transcription	Right Atrium	heart
2	chr12:106685800-106695200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr12:106685800-106695200	Weak transcription	Fetal Lung	lung
4	chr12:106689000-106695800	Weak transcription	Lung	lung
5	chr12:106690200-106695400	Weak transcription	NHLF	lung
6	chr12:106690600-106694600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr12:106690600-106694600	Weak transcription	HSMM	muscle
8	chr12:106690600-106695000	Weak transcription	NH-A	brain
9	chr12:106690600-106695200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr12:106690600-106695400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr12:106690800-106694600	Weak transcription	Osteobl	bone
12	chr12:106690800-106694800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr12:106690800-106695000	Weak transcription	HMEC	breast
14	chr12:106690800-106695400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr12:106690800-106695400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr12:106691000-106694600	Weak transcription	A549	lung
17	chr12:106691600-106694400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr12:106691600-106694600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr12:106691800-106694400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr12:106691800-106694400	Weak transcription	Hela-S3	cervix
21	chr12:106691800-106694600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr12:106691800-106694600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr12:106691800-106694600	Weak transcription	Fetal Heart	heart
24	chr12:106691800-106694600	Weak transcription	NHEK	skin
25	chr12:106691800-106694800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr12:106691800-106695000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr12:106691800-106695000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr12:106691800-106695000	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr12:106691800-106695000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr12:106691800-106695200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr12:106691800-106695200	Weak transcription	Esophagus	oesophagus
32	chr12:106691800-106695200	Weak transcription	GM12878-XiMat	blood
33	chr12:106691800-106695400	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr12:106692000-106694400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr12:106692000-106694600	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr12:106692000-106694600	Weak transcription	Primary B cells from peripheral blood	blood
37	chr12:106692000-106694600	Weak transcription	Primary T cells from cord blood	blood
38	chr12:106692000-106694600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr12:106692000-106694600	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr12:106692000-106694800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr12:106692000-106695000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr12:106692200-106694400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr12:106692200-106694600	Weak transcription	Primary B cells from cord blood	blood
44	chr12:106692200-106695200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr12:106692800-106693800	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr12:106693000-106693800	Enhancers	Stomach Mucosa	stomach
47	chr12:106693000-106694000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr12:106693000-106694200	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr12:106693000-106694600	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr12:106693000-106695200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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