Variant report

Variant	rs1086202
Chromosome Location	chr6:150564232-150564233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12526741	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17527128	0.90[EUR][1000 genomes]
rs55645176	0.91[EUR][1000 genomes]
rs61079197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7452004	1.00[ASN][1000 genomes]
rs789496	0.91[EUR][1000 genomes]
rs809320	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150557600-150568800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:150559800-150565000	Weak transcription	NHEK	skin
3	chr6:150559800-150565000	Weak transcription	Osteobl	bone
4	chr6:150559800-150565400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:150559800-150568800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:150560000-150565400	Weak transcription	K562	blood
7	chr6:150560200-150568400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:150560200-150571000	Weak transcription	HMEC	breast
9	chr6:150560400-150565000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:150560400-150565200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:150560400-150565200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:150560400-150565400	Weak transcription	Fetal Brain Male	brain
13	chr6:150562600-150571000	Weak transcription	Psoas Muscle	Psoas
14	chr6:150563800-150565000	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links