Variant report

Variant	rs789496
Chromosome Location	chr6:150576010-150576011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150574454..150576018-chr6:150610517..150613502,2	K562	blood:
2	chr6:150571832..150575013-chr6:150575106..150579101,3	K562	blood:
3	chr6:150572452..150574254-chr6:150575448..150578031,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1086202	0.91[EUR][1000 genomes]
rs12526741	0.86[EUR][1000 genomes]
rs17527128	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55645176	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57976502	0.86[AMR][1000 genomes]
rs61079197	0.89[EUR][1000 genomes]
rs789497	0.89[AMR][1000 genomes]
rs809320	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150569600-150576800	Weak transcription	Esophagus	oesophagus
2	chr6:150569800-150576400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:150569800-150577000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:150570400-150577600	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr6:150571000-150576800	Enhancers	HMEC	breast
6	chr6:150571000-150579200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:150571400-150579400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:150571600-150576800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:150571600-150577200	Enhancers	Fetal Heart	heart
10	chr6:150572000-150576600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:150572400-150576800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:150572600-150577000	Weak transcription	Lung	lung
13	chr6:150572800-150576200	Enhancers	NHEK	skin
14	chr6:150573600-150577000	Weak transcription	Gastric	stomach
15	chr6:150574000-150576400	Weak transcription	Right Ventricle	heart
16	chr6:150574000-150576600	Enhancers	Osteobl	bone
17	chr6:150574200-150577000	Weak transcription	Hela-S3	cervix
18	chr6:150574200-150578800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:150574400-150576800	Enhancers	HSMMtube	muscle
20	chr6:150574400-150577400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:150574600-150576200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:150574600-150576400	Enhancers	K562	blood
23	chr6:150574800-150576800	Weak transcription	Left Ventricle	heart
24	chr6:150574800-150577200	Weak transcription	NH-A	brain
25	chr6:150574800-150590800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:150575000-150576800	Weak transcription	Fetal Muscle Leg	muscle
27	chr6:150575000-150576800	Weak transcription	Right Atrium	heart
28	chr6:150575600-150576600	Enhancers	Muscle Satellite Cultured Cells	--
29	chr6:150575600-150576800	Weak transcription	Psoas Muscle	Psoas
30	chr6:150575600-150579000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:150575800-150576800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr6:150576000-150576200	Enhancers	Placenta	Placenta
33	chr6:150576000-150576400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:150576000-150576400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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