Variant report

Variant	rs55645176
Chromosome Location	chr6:150558380-150558381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150557817..150561475-chr6:150561596..150566291,6	K562	blood:
2	chr6:150555928..150559365-chr6:150559823..150562005,4	K562	blood:
3	chr6:150549533..150552708-chr6:150557386..150559321,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1086202	0.91[EUR][1000 genomes]
rs12526741	0.90[EUR][1000 genomes]
rs17527128	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57976502	0.91[AMR][1000 genomes]
rs60627955	0.83[AMR][1000 genomes]
rs61079197	0.94[EUR][1000 genomes]
rs789496	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs789497	0.85[AMR][1000 genomes]
rs809320	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150550000-150558600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:150551200-150558800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:150552400-150558600	Weak transcription	Fetal Brain Female	brain
4	chr6:150552600-150559400	Weak transcription	Lung	lung
5	chr6:150554400-150559000	Weak transcription	Osteobl	bone
6	chr6:150554400-150559200	Weak transcription	K562	blood
7	chr6:150555200-150561400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:150555400-150558600	Weak transcription	HMEC	breast
9	chr6:150555400-150559800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:150555800-150558600	Weak transcription	NHEK	skin
11	chr6:150556400-150558600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:150556400-150559800	Enhancers	Left Ventricle	heart
13	chr6:150556400-150560000	Enhancers	Fetal Heart	heart
14	chr6:150556600-150560400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr6:150557000-150560000	Enhancers	Right Ventricle	heart
16	chr6:150557000-150560400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:150557400-150558400	Enhancers	Fetal Brain Male	brain
18	chr6:150557400-150559800	Enhancers	Fetal Lung	lung
19	chr6:150557600-150560000	Enhancers	Right Atrium	heart
20	chr6:150557600-150568800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:150557800-150559000	Weak transcription	Psoas Muscle	Psoas
22	chr6:150557800-150559200	Weak transcription	Adipose Nuclei	Adipose
23	chr6:150558200-150559000	Weak transcription	Fetal Muscle Leg	muscle
24	chr6:150558200-150559000	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links