Variant report

Variant	rs10863932
Chromosome Location	chr1:212084915-212084916
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212074801..212076576-chr1:212084701..212087247,2	MCF-7	breast:
2	chr1:212067506..212069441-chr1:212082442..212085014,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10863930	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11119822	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2002081	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2788119	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2788123	0.89[EUR][1000 genomes]
rs2788126	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2788127	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2788132	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2788143	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2788147	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2808378	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2808379	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2970582	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2970587	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2998418	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4951434	0.83[EUR][1000 genomes]
rs6540712	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6685247	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7533928	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212079600-212087400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:212080400-212087600	Enhancers	Fetal Intestine Large	intestine
3	chr1:212080800-212087000	Enhancers	Fetal Intestine Small	intestine
4	chr1:212081000-212085000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:212081800-212085800	Enhancers	Liver	Liver
6	chr1:212082400-212086600	Enhancers	A549	lung
7	chr1:212082600-212085000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr1:212082800-212093400	Weak transcription	Right Atrium	heart
9	chr1:212083400-212085400	Enhancers	Colonic Mucosa	Colon
10	chr1:212083600-212085400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr1:212084000-212085200	Enhancers	Hela-S3	cervix
12	chr1:212084000-212085600	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr1:212084000-212085800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:212084000-212086000	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr1:212084000-212086000	Enhancers	HepG2	liver
16	chr1:212084200-212085800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr1:212084200-212085800	Enhancers	Stomach Mucosa	stomach
18	chr1:212084200-212090800	Weak transcription	Adipose Nuclei	Adipose
19	chr1:212084400-212085800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:212084400-212086000	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr1:212084800-212085200	Weak transcription	GM12878-XiMat	blood
22	chr1:212084800-212086600	Enhancers	Duodenum Mucosa	Duodenum
23	chr1:212084800-212089200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr1:212084800-212089800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr1:212084800-212090800	Weak transcription	Pancreas	Pancrea
26	chr1:212084800-212113000	Weak transcription	Brain Anterior Caudate	brain

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