Variant report

Variant	rs11119822
Chromosome Location	chr1:212056593-212056594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212054616..212057086-chr1:212058448..212060459,2	K562	blood:
2	chr1:212055586..212057694-chr1:212058396..212059948,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10158561	0.83[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap]
rs10465691	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs10863930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10863932	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11119806	0.83[CHB][hapmap]
rs11119821	0.88[ASN][1000 genomes]
rs12038038	0.81[JPT][hapmap]
rs1539195	0.83[CHB][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap]
rs2788123	0.90[EUR][1000 genomes]
rs2788124	0.94[CHB][hapmap]
rs2788126	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2788127	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2788132	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2788143	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2788147	0.86[EUR][1000 genomes]
rs2808378	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2808379	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28790701	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs28865046	0.81[ASN][1000 genomes]
rs2970582	0.86[EUR][1000 genomes]
rs2970587	0.84[EUR][1000 genomes]
rs3795834	0.89[CHB][hapmap];0.89[CHD][hapmap]
rs4480424	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs4951425	0.83[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap]
rs4951431	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs4951434	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4951550	0.89[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap]
rs4951552	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs4951553	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs4951554	0.83[AMR][1000 genomes]
rs6540712	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6680326	0.83[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap]
rs6685247	0.86[EUR][1000 genomes]
rs6698841	0.81[CEU][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap]
rs7515713	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs7518285	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs7518833	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs7533928	0.86[EUR][1000 genomes]
rs7533951	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs947438	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs9651110	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11119822	RCOR3	cis	cerebellum	SCAN
rs11119822	LPGAT1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212056400-212059400	Weak transcription	GM12878-XiMat	blood

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