Variant report

Variant	rs7533951
Chromosome Location	chr1:211983946-211983947
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211980592..211984207-chr1:211990787..211994145,4	K562	blood:
2	chr1:211982593..211984872-chr1:211986745..211989061,2	K562	blood:
3	chr1:211981765..211984093-chr1:211986462..211988245,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10158561	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10465691	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[ASN][1000 genomes]
rs10863925	0.99[ASN][1000 genomes]
rs11119806	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.91[ASN][1000 genomes]
rs12038038	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1539195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28368551	0.91[ASN][1000 genomes]
rs28865046	0.86[ASN][1000 genomes]
rs3795834	0.94[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs4320838	1.00[ASN][1000 genomes]
rs4480424	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[ASN][1000 genomes]
rs4951425	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4951431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951548	0.91[ASN][1000 genomes]
rs4951550	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4951552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951553	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4951554	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6658128	1.00[ASN][1000 genomes]
rs6680326	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6688596	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6698841	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6702617	0.91[ASN][1000 genomes]
rs7515713	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7518285	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[ASN][1000 genomes]
rs7518833	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[ASN][1000 genomes]
rs947438	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9651110	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211915800-211991800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:211916800-211994200	Weak transcription	Fetal Brain Male	brain
3	chr1:211919200-212001200	Weak transcription	Gastric	stomach
4	chr1:211923000-211991800	Weak transcription	HSMM	muscle
5	chr1:211924000-212002400	Weak transcription	NHLF	lung
6	chr1:211938200-211999400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:211939600-211992600	Weak transcription	Esophagus	oesophagus
8	chr1:211939800-212002400	Weak transcription	HSMMtube	muscle
9	chr1:211940000-212000600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr1:211946200-211984200	Weak transcription	NH-A	brain
11	chr1:211947400-212002400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:211950000-211987000	Weak transcription	Fetal Thymus	thymus
13	chr1:211951400-211992600	Weak transcription	Ovary	ovary
14	chr1:211952200-212003000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr1:211957600-211985200	Weak transcription	Brain Germinal Matrix	brain
16	chr1:211957600-211998800	Weak transcription	NHDF-Ad	bronchial
17	chr1:211957600-212000800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr1:211958000-211984200	Weak transcription	HUVEC	blood vessel
19	chr1:211960800-211987600	Weak transcription	Pancreas	Pancrea
20	chr1:211961200-212002200	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr1:211963600-211985800	Weak transcription	Hela-S3	cervix
22	chr1:211965800-211985400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr1:211965800-211992600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:211965800-212002200	Weak transcription	Primary T cells from cord blood	blood
25	chr1:211966400-211997400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr1:211966400-212002400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr1:211966600-211984000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr1:211966600-211985200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr1:211966600-211987200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr1:211966600-211988800	Weak transcription	Lung	lung
31	chr1:211966600-211992600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr1:211966600-211997400	Weak transcription	Spleen	Spleen
33	chr1:211967000-211998800	Weak transcription	Osteobl	bone
34	chr1:211970000-211985200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr1:211970000-211986000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr1:211970000-211988800	Weak transcription	Adipose Nuclei	Adipose
37	chr1:211970800-211990600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr1:211971800-212002400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr1:211972400-211987600	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr1:211973000-211986000	Weak transcription	Left Ventricle	heart
41	chr1:211973000-211987000	Weak transcription	Brain Angular Gyrus	brain
42	chr1:211973000-211987000	Weak transcription	Psoas Muscle	Psoas
43	chr1:211973200-211987600	Weak transcription	Right Ventricle	heart
44	chr1:211973400-211986000	Weak transcription	HepG2	liver
45	chr1:211973600-211986600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr1:211974000-212001200	Weak transcription	Small Intestine	intestine
47	chr1:211974400-211984200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr1:211974600-211985400	Weak transcription	Fetal Heart	heart
49	chr1:211974800-211986200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr1:211974800-211987000	Weak transcription	Brain Anterior Caudate	brain

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