Variant report

Variant	rs6658128
Chromosome Location	chr1:212006337-212006338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr1:212005822-212006464	GM12878	blood:	n/a	n/a
2	NFYB	chr1:212006210-212006486	GM12878	blood:	n/a	n/a
3	RUNX3	chr1:212006007-212006999	GM12878	blood:	n/a	n/a
4	CEBPD	chr1:212005986-212006427	K562	blood:	n/a	n/a
5	IKZF1	chr1:212005980-212007046	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
LPGAT1	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10158561	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10465691	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10863925	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11119806	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11119821	0.89[EUR][1000 genomes]
rs12038038	0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1539195	0.94[ASN][1000 genomes]
rs2788120	0.82[EUR][1000 genomes]
rs28368551	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28790701	0.82[AMR][1000 genomes]
rs28865046	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3795834	0.82[ASN][1000 genomes]
rs4320838	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4480424	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4951425	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4951431	1.00[ASN][1000 genomes]
rs4951548	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4951550	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4951552	1.00[ASN][1000 genomes]
rs4951553	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4951554	0.89[ASN][1000 genomes]
rs6680326	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6688596	0.98[ASN][1000 genomes]
rs6698841	0.85[ASN][1000 genomes]
rs6702617	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7515713	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7518285	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7518833	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7533951	1.00[ASN][1000 genomes]
rs947438	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9651110	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212004600-212007200	Enhancers	Primary B cells from peripheral blood	blood
2	chr1:212004600-212007200	Enhancers	Fetal Intestine Large	intestine
3	chr1:212004600-212008000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:212004600-212008000	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr1:212004600-212008200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr1:212004600-212008200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr1:212004600-212008200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr1:212004600-212008600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:212004800-212006400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr1:212004800-212006400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:212004800-212006400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:212004800-212006600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr1:212004800-212007200	Enhancers	Primary B cells from cord blood	blood
14	chr1:212004800-212007800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr1:212004800-212008000	Enhancers	Primary T cells fromperipheralblood	blood
16	chr1:212004800-212008000	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr1:212004800-212008200	Enhancers	Primary T cells from cord blood	blood
18	chr1:212004800-212008600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr1:212005000-212008200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr1:212005200-212006400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:212005200-212006400	Weak transcription	Fetal Intestine Small	intestine
22	chr1:212005200-212006800	Weak transcription	Fetal Thymus	thymus
23	chr1:212005200-212007800	Weak transcription	Thymus	Thymus
24	chr1:212005200-212008000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr1:212005200-212008200	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr1:212005200-212009600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr1:212005800-212006600	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr1:212005800-212007200	Enhancers	K562	blood
29	chr1:212005800-212007600	Enhancers	Primary hematopoietic stem cells	blood
30	chr1:212006000-212007200	Flanking Active TSS	GM12878-XiMat	blood
31	chr1:212006200-212006400	Enhancers	Stomach Mucosa	stomach
32	chr1:212006200-212007200	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr1:212006200-212007200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
34	chr1:212006200-212007200	Enhancers	Duodenum Mucosa	Duodenum
35	chr1:212006200-212007400	Enhancers	Dnd41	blood
36	chr1:212006200-212007800	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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