Variant report

Variant	rs7518285
Chromosome Location	chr1:211925459-211925460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211923712..211926252-chr1:211930784..211933436,2	K562	blood:
2	chr1:211908649..211910536-chr1:211924559..211927558,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10158561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10465691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10863925	0.90[ASN][1000 genomes]
rs11119806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12038038	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1539195	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs28368551	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3795834	0.84[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4320838	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4480424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951431	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[ASN][1000 genomes]
rs4951548	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951550	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951552	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[ASN][1000 genomes]
rs4951553	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4951554	0.81[ASN][1000 genomes]
rs6658128	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6680326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6688596	0.89[ASN][1000 genomes]
rs6698841	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6702617	0.82[ASN][1000 genomes]
rs7515713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7518833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7533951	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[ASN][1000 genomes]
rs947438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9651110	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211909400-211939200	Weak transcription	Ovary	ovary
2	chr1:211909600-211939400	Weak transcription	Esophagus	oesophagus
3	chr1:211911800-211927400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:211912400-211925600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr1:211912600-211964600	Weak transcription	NHEK	skin
6	chr1:211912800-211970200	Weak transcription	HMEC	breast
7	chr1:211913800-211967800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr1:211913800-211968800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr1:211913800-211969600	Weak transcription	Small Intestine	intestine
10	chr1:211914000-211949600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:211914000-211960400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr1:211914000-211965400	Weak transcription	Thymus	Thymus
13	chr1:211914000-211973600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr1:211914200-211947600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr1:211914400-211925800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr1:211915800-211991800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:211916200-211965400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:211916800-211994200	Weak transcription	Fetal Brain Male	brain
19	chr1:211917000-211926400	Weak transcription	K562	blood
20	chr1:211917000-211970400	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr1:211917600-211934800	Weak transcription	Colon Smooth Muscle	Colon
22	chr1:211918800-211927200	Weak transcription	Fetal Heart	heart
23	chr1:211918800-211930800	Weak transcription	Fetal Lung	lung
24	chr1:211919000-211931200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr1:211919200-212001200	Weak transcription	Gastric	stomach
26	chr1:211919800-211926400	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr1:211920000-211928000	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr1:211920200-211927800	Strong transcription	Primary B cells from cord blood	blood
29	chr1:211920400-211931800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr1:211920600-211925800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr1:211922600-211965600	Weak transcription	Osteobl	bone
32	chr1:211922800-211927200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr1:211922800-211929400	Weak transcription	Spleen	Spleen
34	chr1:211922800-211932200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr1:211922800-211939200	Weak transcription	HSMMtube	muscle
36	chr1:211922800-211956200	Weak transcription	HUVEC	blood vessel
37	chr1:211922800-211963000	Weak transcription	Hela-S3	cervix
38	chr1:211922800-211964800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr1:211922800-211965400	Weak transcription	Right Ventricle	heart
40	chr1:211923000-211927000	Weak transcription	Brain Germinal Matrix	brain
41	chr1:211923000-211939200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr1:211923000-211939200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr1:211923000-211951800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr1:211923000-211967200	Weak transcription	Colonic Mucosa	Colon
45	chr1:211923000-211991800	Weak transcription	HSMM	muscle
46	chr1:211923200-211925600	Weak transcription	Fetal Intestine Small	intestine
47	chr1:211923200-211939200	Weak transcription	Fetal Stomach	stomach
48	chr1:211923200-211963400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr1:211923200-211967200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr1:211923400-211929800	Weak transcription	Fetal Thymus	thymus

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