Variant report

Variant	rs4480424
Chromosome Location	chr1:211918115-211918116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10158561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10465691	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.91[TSI][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10863925	0.90[ASN][1000 genomes]
rs11119806	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12038038	0.89[CHB][hapmap];0.94[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1539195	1.00[CHB][hapmap];0.94[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];0.97[ASN][1000 genomes]
rs28368551	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3795834	0.87[ASW][hapmap];0.84[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.98[LWK][hapmap];0.97[MKK][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4320838	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4951425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951431	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[ASN][1000 genomes]
rs4951548	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951550	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951552	1.00[CHB][hapmap];0.94[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[ASN][1000 genomes]
rs4951553	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4951554	0.81[ASN][1000 genomes]
rs6658128	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6680326	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6688596	0.89[ASN][1000 genomes]
rs6698841	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];0.85[ASN][1000 genomes]
rs6702617	0.82[ASN][1000 genomes]
rs7515713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7518285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7518833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7533951	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[ASN][1000 genomes]
rs947438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9651110	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211907000-211920800	Weak transcription	Aorta	Aorta
2	chr1:211908800-211920800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr1:211908800-211920800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr1:211909200-211920200	Weak transcription	Fetal Intestine Large	intestine
5	chr1:211909200-211922200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:211909400-211920800	Weak transcription	Pancreas	Pancrea
7	chr1:211909400-211921000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr1:211909400-211921600	Weak transcription	Fetal Intestine Small	intestine
9	chr1:211909400-211939200	Weak transcription	Ovary	ovary
10	chr1:211909600-211921400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr1:211909600-211922000	Weak transcription	Placenta	Placenta
12	chr1:211909600-211922400	Weak transcription	HSMM	muscle
13	chr1:211909600-211923600	Weak transcription	NHDF-Ad	bronchial
14	chr1:211909600-211939400	Weak transcription	Esophagus	oesophagus
15	chr1:211909800-211919200	Enhancers	Brain Hippocampus Middle	brain
16	chr1:211909800-211919400	Enhancers	Brain Cingulate Gyrus	brain
17	chr1:211909800-211920000	Weak transcription	Adipose Nuclei	Adipose
18	chr1:211909800-211921400	Weak transcription	HSMMtube	muscle
19	chr1:211909800-211922200	Weak transcription	HUVEC	blood vessel
20	chr1:211911200-211920200	Weak transcription	Fetal Muscle Leg	muscle
21	chr1:211911200-211920800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr1:211911400-211920200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr1:211911800-211921000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:211911800-211927400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr1:211912400-211920800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:211912400-211922000	Weak transcription	Brain Germinal Matrix	brain
27	chr1:211912400-211922000	Weak transcription	Right Ventricle	heart
28	chr1:211912400-211925600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr1:211912600-211920800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr1:211912600-211920800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr1:211912600-211920800	Weak transcription	Fetal Stomach	stomach
32	chr1:211912600-211920800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr1:211912600-211921000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr1:211912600-211921800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr1:211912600-211964600	Weak transcription	NHEK	skin
36	chr1:211912800-211920400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr1:211912800-211970200	Weak transcription	HMEC	breast
38	chr1:211913200-211920200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr1:211913200-211920800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr1:211913400-211919400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr1:211913400-211920000	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr1:211913400-211920200	Weak transcription	Primary B cells from cord blood	blood
43	chr1:211913400-211922400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr1:211913600-211920800	Weak transcription	Primary T cells from cord blood	blood
45	chr1:211913600-211920800	Weak transcription	Lung	lung
46	chr1:211913800-211920200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr1:211913800-211920200	Weak transcription	Primary hematopoietic stem cells	blood
48	chr1:211913800-211920800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr1:211913800-211922200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr1:211913800-211922400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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