Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212000642..212005751-chr1:212006753..212012287,13	K562	blood:
2	chr1:212006603..212008362-chr1:212010474..212013033,2	K562	blood:

Variant related genes	Relation type
ENSG00000123684	Chromatin interaction
ENSG00000229258	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10158561	0.93[ASN][1000 genomes]
rs10465691	0.89[ASN][1000 genomes]
rs10863925	0.98[ASN][1000 genomes]
rs11119806	0.89[ASN][1000 genomes]
rs12038038	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1539195	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2002081	0.83[EUR][1000 genomes]
rs2788119	0.83[EUR][1000 genomes]
rs28368551	0.89[ASN][1000 genomes]
rs28865046	0.84[ASN][1000 genomes]
rs2998418	0.83[EUR][1000 genomes]
rs3795834	0.81[ASN][1000 genomes]
rs4320838	0.98[ASN][1000 genomes]
rs4480424	0.89[ASN][1000 genomes]
rs4951425	0.89[ASN][1000 genomes]
rs4951431	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4951548	0.89[ASN][1000 genomes]
rs4951550	0.89[ASN][1000 genomes]
rs4951552	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4951553	0.89[ASN][1000 genomes]
rs4951554	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6658128	0.98[ASN][1000 genomes]
rs6680326	0.89[ASN][1000 genomes]
rs6698841	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6702617	0.89[ASN][1000 genomes]
rs7515713	0.98[ASN][1000 genomes]
rs7518285	0.89[ASN][1000 genomes]
rs7518833	0.89[ASN][1000 genomes]
rs7533951	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs947438	0.89[ASN][1000 genomes]
rs9651110	0.98[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212004600-212008600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:212004800-212008600	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr1:212005200-212009600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:212008000-212012000	Weak transcription	GM12878-XiMat	blood

Quick Search: