Variant report

Variant	rs11119806
Chromosome Location	chr1:211921229-211921230
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10158561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10465691	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10863925	0.90[ASN][1000 genomes]
rs12038038	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1539195	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.97[ASN][1000 genomes]
rs28368551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3795834	1.00[ASW][hapmap];0.84[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4320838	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4480424	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951431	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.91[ASN][1000 genomes]
rs4951548	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951550	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951552	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[MKK][hapmap];0.83[YRI][hapmap];0.91[ASN][1000 genomes]
rs4951553	0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4951554	0.81[ASN][1000 genomes]
rs6658128	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6680326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6688596	0.89[ASN][1000 genomes]
rs6698841	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.85[ASN][1000 genomes]
rs6702617	0.82[ASN][1000 genomes]
rs7515713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7518285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7518833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7533951	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.91[ASN][1000 genomes]
rs947438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9651110	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11119806	YOD1	cis	parietal	SCAN
rs11119806	RD3	cis	cerebellum	SCAN
rs11119806	PAGE4	trans	cerebellum	SCAN

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211909200-211922200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:211909400-211921600	Weak transcription	Fetal Intestine Small	intestine
3	chr1:211909400-211939200	Weak transcription	Ovary	ovary
4	chr1:211909600-211921400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:211909600-211922000	Weak transcription	Placenta	Placenta
6	chr1:211909600-211922400	Weak transcription	HSMM	muscle
7	chr1:211909600-211923600	Weak transcription	NHDF-Ad	bronchial
8	chr1:211909600-211939400	Weak transcription	Esophagus	oesophagus
9	chr1:211909800-211921400	Weak transcription	HSMMtube	muscle
10	chr1:211909800-211922200	Weak transcription	HUVEC	blood vessel
11	chr1:211911800-211927400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr1:211912400-211922000	Weak transcription	Brain Germinal Matrix	brain
13	chr1:211912400-211922000	Weak transcription	Right Ventricle	heart
14	chr1:211912400-211925600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr1:211912600-211921800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:211912600-211964600	Weak transcription	NHEK	skin
17	chr1:211912800-211970200	Weak transcription	HMEC	breast
18	chr1:211913400-211922400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr1:211913800-211922200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr1:211913800-211922400	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr1:211913800-211967800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr1:211913800-211968800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr1:211913800-211969600	Weak transcription	Small Intestine	intestine
24	chr1:211914000-211922200	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr1:211914000-211949600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr1:211914000-211960400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr1:211914000-211965400	Weak transcription	Thymus	Thymus
28	chr1:211914000-211973600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr1:211914200-211921400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr1:211914200-211922000	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr1:211914200-211922200	Weak transcription	Spleen	Spleen
32	chr1:211914200-211947600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr1:211914400-211922200	Weak transcription	Dnd41	blood
34	chr1:211914400-211925800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr1:211915200-211923200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr1:211915800-211991800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr1:211916000-211922200	Weak transcription	NH-A	brain
38	chr1:211916200-211965400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr1:211916600-211922400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr1:211916600-211922400	Weak transcription	Fetal Thymus	thymus
41	chr1:211916800-211994200	Weak transcription	Fetal Brain Male	brain
42	chr1:211917000-211925400	Strong transcription	Liver	Liver
43	chr1:211917000-211926400	Weak transcription	K562	blood
44	chr1:211917000-211970400	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr1:211917600-211922200	Weak transcription	Brain Angular Gyrus	brain
46	chr1:211917600-211922200	Weak transcription	Psoas Muscle	Psoas
47	chr1:211917600-211934800	Weak transcription	Colon Smooth Muscle	Colon
48	chr1:211917800-211922600	Weak transcription	Fetal Kidney	kidney
49	chr1:211918400-211925200	Weak transcription	Stomach Mucosa	stomach
50	chr1:211918800-211927200	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links