Variant report

Variant	rs4320838
Chromosome Location	chr1:212001838-212001839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211873619..211875227-chr1:212000952..212002871,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10158561	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10465691	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10863925	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11119806	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11119821	0.86[EUR][1000 genomes]
rs12038038	0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1539195	0.94[ASN][1000 genomes]
rs28368551	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28865046	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3795834	0.82[ASN][1000 genomes]
rs4480424	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4951425	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4951431	1.00[ASN][1000 genomes]
rs4951548	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4951550	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4951552	1.00[ASN][1000 genomes]
rs4951553	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4951554	0.89[ASN][1000 genomes]
rs6658128	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6680326	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6688596	0.98[ASN][1000 genomes]
rs6698841	0.85[ASN][1000 genomes]
rs6702617	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7515713	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7518285	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7518833	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7533951	1.00[ASN][1000 genomes]
rs947438	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9651110	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211924000-212002400	Weak transcription	NHLF	lung
2	chr1:211939800-212002400	Weak transcription	HSMMtube	muscle
3	chr1:211947400-212002400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:211952200-212003000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:211961200-212002200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr1:211965800-212002200	Weak transcription	Primary T cells from cord blood	blood
7	chr1:211966400-212002400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:211971800-212002400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr1:211983000-212002400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:211983200-212002400	Weak transcription	Thymus	Thymus
11	chr1:211984600-212002400	Weak transcription	NH-A	brain
12	chr1:211984800-212002000	Weak transcription	HUVEC	blood vessel
13	chr1:211984800-212002400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr1:211986200-212002400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr1:211986200-212002800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:211987200-212002400	Weak transcription	HMEC	breast
17	chr1:211988200-212002400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr1:211988400-212002000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr1:211988600-212002400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr1:211989600-212002800	Weak transcription	Lung	lung
21	chr1:211991200-212002600	Weak transcription	Placenta	Placenta
22	chr1:211992200-212002400	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr1:211993200-212002200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr1:211995000-212002800	Weak transcription	Fetal Lung	lung
25	chr1:211997200-212002400	Weak transcription	Fetal Kidney	kidney
26	chr1:211997800-212002400	Weak transcription	Fetal Stomach	stomach
27	chr1:211997800-212002600	Weak transcription	Colonic Mucosa	Colon
28	chr1:211997800-212003000	Weak transcription	Esophagus	oesophagus
29	chr1:211997800-212003000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr1:211998000-212002400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:211998400-212002400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr1:211999400-212002400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr1:211999400-212002800	Active TSS	GM12878-XiMat	blood
34	chr1:211999400-212004400	Active TSS	Fetal Intestine Small	intestine
35	chr1:211999600-212002400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr1:211999600-212002400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr1:211999600-212002400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr1:211999600-212002400	Active TSS	Fetal Intestine Large	intestine
39	chr1:211999600-212002400	Weak transcription	Osteobl	bone
40	chr1:211999800-212002400	Weak transcription	HSMM	muscle
41	chr1:212000000-212002400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr1:212000000-212002400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr1:212000000-212002400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr1:212000000-212002400	Weak transcription	NHDF-Ad	bronchial
45	chr1:212000000-212002400	Weak transcription	NHEK	skin
46	chr1:212000000-212002600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr1:212000200-212002000	Enhancers	Fetal Heart	heart
48	chr1:212000200-212002400	Enhancers	Brain Germinal Matrix	brain
49	chr1:212000200-212004600	Active TSS	Brain Inferior Temporal Lobe	brain
50	chr1:212000400-212002000	Genic enhancers	Primary B cells from cord blood	blood

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