Variant report

Variant	rs11119821
Chromosome Location	chr1:212050032-212050033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212046115..212050313-chr1:212051402..212055814,5	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10158561	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap]
rs10465691	1.00[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap]
rs10863930	0.88[ASN][1000 genomes]
rs11119806	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs11119822	0.88[ASN][1000 genomes]
rs12038038	0.81[JPT][hapmap]
rs1539195	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs2002081	0.82[ASN][1000 genomes]
rs2788119	0.82[ASN][1000 genomes]
rs2788120	0.90[EUR][1000 genomes]
rs2788124	0.84[CHB][hapmap]
rs2788147	0.83[ASN][1000 genomes]
rs2808378	0.84[ASN][1000 genomes]
rs2808379	0.81[ASN][1000 genomes]
rs28790701	0.82[ASN][1000 genomes]
rs28865046	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2970582	0.82[ASN][1000 genomes]
rs2998418	0.82[ASN][1000 genomes]
rs3795834	0.84[CEU][hapmap]
rs4320838	0.86[EUR][1000 genomes]
rs4480424	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap]
rs4951425	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap]
rs4951431	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs4951434	0.99[ASN][1000 genomes]
rs4951550	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs4951552	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs4951553	0.91[CEU][hapmap];0.82[JPT][hapmap]
rs6540712	0.81[ASN][1000 genomes]
rs6658128	0.89[EUR][1000 genomes]
rs6680326	1.00[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap]
rs6685247	0.82[ASN][1000 genomes]
rs6698841	0.81[JPT][hapmap]
rs7515713	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs7518285	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap]
rs7518833	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap]
rs7533928	0.82[ASN][1000 genomes]
rs7533951	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs947438	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap]
rs9651110	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212048600-212050400	Weak transcription	Adipose Nuclei	Adipose
2	chr1:212049800-212050200	Enhancers	Fetal Muscle Leg	muscle
3	chr1:212050000-212050800	Enhancers	Muscle Satellite Cultured Cells	--

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