Variant report

Variant	rs4951431
Chromosome Location	chr1:212007681-212007682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212000642..212005751-chr1:212006753..212012287,13	K562	blood:
2	chr1:212006603..212008362-chr1:212010474..212013033,2	K562	blood:

Variant related genes	Relation type
ENSG00000229258	Chromatin interaction
ENSG00000123684	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10158561	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10465691	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[ASN][1000 genomes]
rs10863925	0.99[ASN][1000 genomes]
rs11119806	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.91[ASN][1000 genomes]
rs12038038	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1539195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2002081	0.83[EUR][1000 genomes]
rs2788119	0.83[EUR][1000 genomes]
rs28368551	0.91[ASN][1000 genomes]
rs28865046	0.86[ASN][1000 genomes]
rs2998418	0.83[EUR][1000 genomes]
rs3795834	0.94[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs4320838	1.00[ASN][1000 genomes]
rs4480424	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[ASN][1000 genomes]
rs4951425	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4951548	0.91[ASN][1000 genomes]
rs4951550	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4951552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951553	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4951554	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6658128	1.00[ASN][1000 genomes]
rs6680326	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6688596	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6698841	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6702617	0.91[ASN][1000 genomes]
rs7515713	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7518285	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[ASN][1000 genomes]
rs7518833	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[ASN][1000 genomes]
rs7533951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947438	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9651110	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212004600-212008000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:212004600-212008000	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr1:212004600-212008200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr1:212004600-212008200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr1:212004600-212008200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr1:212004600-212008600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr1:212004800-212007800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr1:212004800-212008000	Enhancers	Primary T cells fromperipheralblood	blood
9	chr1:212004800-212008000	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr1:212004800-212008200	Enhancers	Primary T cells from cord blood	blood
11	chr1:212004800-212008600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr1:212005000-212008200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:212005200-212007800	Weak transcription	Thymus	Thymus
14	chr1:212005200-212008000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr1:212005200-212008200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr1:212005200-212009600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr1:212006200-212007800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr1:212006400-212008000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr1:212007200-212008000	Enhancers	GM12878-XiMat	blood
20	chr1:212007600-212008000	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links