Variant report

Variant	rs4951553
Chromosome Location	chr1:211986052-211986053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211984186..211988892-chr1:211994677..211996452,5	K562	blood:
2	chr1:211976739..211979866-chr1:211985125..211987086,3	K562	blood:
3	chr1:211985189..211987577-chr1:212002510..212005409,2	K562	blood:

Variant related genes	Relation type
ENSG00000123684	Chromatin interaction
ENSG00000229258	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10158561	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[ASN][1000 genomes]
rs10465691	0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10863925	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11119806	0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12038038	0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[ASN][1000 genomes]
rs1539195	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[ASN][1000 genomes]
rs2788122	0.81[EUR][1000 genomes]
rs2788124	0.84[CHB][hapmap]
rs28368551	0.82[ASN][1000 genomes]
rs28790701	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3795834	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4320838	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4480424	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4951425	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4951431	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4951548	0.82[ASN][1000 genomes]
rs4951550	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[ASN][1000 genomes]
rs4951552	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4951554	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6658128	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6680326	0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[ASN][1000 genomes]
rs6688596	0.89[ASN][1000 genomes]
rs6698841	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6702617	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7515713	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7518285	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7518833	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7533951	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs947438	0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9651110	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211915800-211991800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:211916800-211994200	Weak transcription	Fetal Brain Male	brain
3	chr1:211919200-212001200	Weak transcription	Gastric	stomach
4	chr1:211923000-211991800	Weak transcription	HSMM	muscle
5	chr1:211924000-212002400	Weak transcription	NHLF	lung
6	chr1:211938200-211999400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:211939600-211992600	Weak transcription	Esophagus	oesophagus
8	chr1:211939800-212002400	Weak transcription	HSMMtube	muscle
9	chr1:211940000-212000600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr1:211947400-212002400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:211950000-211987000	Weak transcription	Fetal Thymus	thymus
12	chr1:211951400-211992600	Weak transcription	Ovary	ovary
13	chr1:211952200-212003000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr1:211957600-211998800	Weak transcription	NHDF-Ad	bronchial
15	chr1:211957600-212000800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:211960800-211987600	Weak transcription	Pancreas	Pancrea
17	chr1:211961200-212002200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr1:211965800-211992600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:211965800-212002200	Weak transcription	Primary T cells from cord blood	blood
20	chr1:211966400-211997400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr1:211966400-212002400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr1:211966600-211987200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr1:211966600-211988800	Weak transcription	Lung	lung
24	chr1:211966600-211992600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr1:211966600-211997400	Weak transcription	Spleen	Spleen
26	chr1:211967000-211998800	Weak transcription	Osteobl	bone
27	chr1:211970000-211988800	Weak transcription	Adipose Nuclei	Adipose
28	chr1:211970800-211990600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr1:211971800-212002400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr1:211972400-211987600	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr1:211973000-211987000	Weak transcription	Brain Angular Gyrus	brain
32	chr1:211973000-211987000	Weak transcription	Psoas Muscle	Psoas
33	chr1:211973200-211987600	Weak transcription	Right Ventricle	heart
34	chr1:211973600-211986600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr1:211974000-212001200	Weak transcription	Small Intestine	intestine
36	chr1:211974800-211986200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr1:211974800-211987000	Weak transcription	Brain Anterior Caudate	brain
38	chr1:211974800-211987000	Weak transcription	NHEK	skin
39	chr1:211975200-211992000	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr1:211976400-211987000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr1:211976800-211991400	Weak transcription	Dnd41	blood
42	chr1:211976800-211997000	Weak transcription	Fetal Kidney	kidney
43	chr1:211977600-211987400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr1:211978000-211988200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr1:211979400-211987000	Weak transcription	Colon Smooth Muscle	Colon
46	chr1:211979400-211989400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr1:211979400-212000600	Weak transcription	Aorta	Aorta
48	chr1:211980000-211987000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr1:211980000-211987000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr1:211981200-211997200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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