Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-INTS7-2	chr1:212059601-212062399	NONHSAT009336

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10863930	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10863932	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11119822	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2002081	0.84[ASN][1000 genomes]
rs2788119	0.84[ASN][1000 genomes]
rs2788123	0.87[EUR][1000 genomes]
rs2788126	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2788132	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2788143	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2788147	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2808378	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2808379	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28790701	0.80[ASN][1000 genomes]
rs2970582	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2970587	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2998418	0.84[ASN][1000 genomes]
rs4951434	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6540712	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6685247	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7533928	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212060000-212062600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:212060000-212068600	Weak transcription	A549	lung
3	chr1:212060200-212062600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:212061600-212062400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:212061600-212062600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:212061600-212062600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:212061600-212063600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr1:212061800-212062600	Weak transcription	Pancreas	Pancrea
9	chr1:212061800-212064400	Weak transcription	Liver	Liver
10	chr1:212061800-212065600	Weak transcription	Adipose Nuclei	Adipose
11	chr1:212062000-212064000	Weak transcription	HepG2	liver
12	chr1:212062200-212063200	ZNF genes & repeats	Fetal Intestine Small	intestine

Quick Search: