Variant report

Variant	rs10864907
Chromosome Location	chr2:113683875-113683876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10178396	0.92[CEU][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10188477	0.80[AMR][1000 genomes]
rs10188765	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10221977	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10864908	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11123153	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11683383	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11690185	0.86[CHB][hapmap]
rs11695077	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11696039	0.90[CHB][hapmap]
rs13029531	0.83[MEX][hapmap]
rs2708919	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2723149	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2723151	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4254516	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6747618	0.92[CEU][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs879710	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs879711	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961338	chr2:113657963-113691422	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Pulmonary function	23932459	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10864907	DPP10	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113682800-113685600	Weak transcription	K562	blood
2	chr2:113683200-113684400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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