Variant report

Variant	rs11695077
Chromosome Location	chr2:113690442-113690443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IL37-3	chr2:113690202-113690748	NONHSAT073735

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10178396	0.96[CEU][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10188477	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10188765	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10221977	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10864907	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10864908	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11123153	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11683383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11690185	0.90[CHB][hapmap];0.92[CHD][hapmap];0.84[ASN][1000 genomes]
rs11690399	0.81[CEU][hapmap]
rs11696039	0.95[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs11897907	0.81[CEU][hapmap]
rs12105482	0.82[ASN][1000 genomes]
rs12464758	0.84[ASN][1000 genomes]
rs12465526	0.84[ASN][1000 genomes]
rs12466604	0.84[ASN][1000 genomes]
rs12466653	0.84[ASN][1000 genomes]
rs12466697	0.82[ASN][1000 genomes]
rs12467810	0.91[ASN][1000 genomes]
rs12467847	0.91[ASN][1000 genomes]
rs12470439	0.84[ASN][1000 genomes]
rs12614316	0.84[ASN][1000 genomes]
rs12614988	0.84[ASN][1000 genomes]
rs12618418	0.82[ASN][1000 genomes]
rs12623837	0.84[ASN][1000 genomes]
rs12993351	0.84[ASN][1000 genomes]
rs12995439	0.84[ASN][1000 genomes]
rs13026837	0.84[ASN][1000 genomes]
rs13029531	0.81[CEU][hapmap]
rs2708919	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2723149	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2723151	0.82[EUR][1000 genomes]
rs34027384	0.84[ASN][1000 genomes]
rs4254516	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66591921	0.82[ASN][1000 genomes]
rs6705432	0.84[ASN][1000 genomes]
rs6722962	0.84[ASN][1000 genomes]
rs6723197	0.84[ASN][1000 genomes]
rs6733001	0.84[ASN][1000 genomes]
rs6733003	0.84[ASN][1000 genomes]
rs6747618	0.96[CEU][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67995749	0.84[ASN][1000 genomes]
rs879710	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs879711	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961338	chr2:113657963-113691422	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11695077	DPP10	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113686000-113690600	Weak transcription	Placenta	Placenta

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