Variant report

Variant	rs12467810
Chromosome Location	chr2:113691060-113691061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10864907	0.81[CHB][hapmap];0.80[CHD][hapmap];0.81[JPT][hapmap]
rs11683383	0.91[ASN][1000 genomes]
rs11690185	0.95[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs11695077	0.91[ASN][1000 genomes]
rs11696039	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs12105482	0.90[ASN][1000 genomes]
rs12464758	0.91[ASN][1000 genomes]
rs12465526	0.91[ASN][1000 genomes]
rs12466604	0.91[ASN][1000 genomes]
rs12466653	0.91[ASN][1000 genomes]
rs12466697	0.90[ASN][1000 genomes]
rs12467847	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12470439	0.91[ASN][1000 genomes]
rs12614316	0.91[ASN][1000 genomes]
rs12614988	0.91[ASN][1000 genomes]
rs12616801	0.85[CHB][hapmap];0.80[CHD][hapmap]
rs12618418	0.90[ASN][1000 genomes]
rs12623837	0.91[ASN][1000 genomes]
rs12993351	0.91[ASN][1000 genomes]
rs12995439	0.91[ASN][1000 genomes]
rs13026837	0.91[ASN][1000 genomes]
rs13033104	0.81[CHB][hapmap]
rs1317913	0.87[ASN][1000 genomes]
rs13418326	0.80[CHB][hapmap]
rs2305152	0.81[CHB][hapmap];0.81[CHD][hapmap]
rs2464913	0.95[YRI][hapmap]
rs2466448	0.95[YRI][hapmap]
rs2708931	0.92[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2708943	0.95[YRI][hapmap]
rs2708947	0.95[YRI][hapmap]
rs2708957	0.91[YRI][hapmap]
rs2708958	0.95[YRI][hapmap]
rs2708959	0.95[YRI][hapmap]
rs2708960	0.95[YRI][hapmap]
rs2708961	0.95[YRI][hapmap]
rs2708962	0.95[YRI][hapmap]
rs2708965	0.91[YRI][hapmap]
rs2723168	0.86[YRI][hapmap]
rs2723169	0.95[YRI][hapmap]
rs2723175	0.82[YRI][hapmap]
rs2723177	0.95[YRI][hapmap]
rs2723183	0.95[YRI][hapmap]
rs2723187	0.95[YRI][hapmap]
rs2723189	0.95[YRI][hapmap]
rs2723192	0.95[YRI][hapmap]
rs34027384	0.91[ASN][1000 genomes]
rs4387792	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4848309	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66591921	0.90[ASN][1000 genomes]
rs6705432	0.91[ASN][1000 genomes]
rs6722962	0.91[ASN][1000 genomes]
rs6723197	0.91[ASN][1000 genomes]
rs6733001	0.91[ASN][1000 genomes]
rs6733003	0.91[ASN][1000 genomes]
rs67995749	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961338	chr2:113657963-113691422	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113690600-113691200	Enhancers	Placenta	Placenta
2	chr2:113690800-113691200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:113690800-113691200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:113691000-113691400	Enhancers	Fetal Intestine Small	intestine
5	chr2:113691000-113693000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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