Variant report
| Variant | rs4848309 |
|---|---|
| Chromosome Location | chr2:113691926-113691927 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10178396 | 0.83[ASN][1000 genomes] |
| rs10199311 | 0.84[ASN][1000 genomes] |
| rs10221977 | 0.83[ASN][1000 genomes] |
| rs10864908 | 0.82[ASN][1000 genomes] |
| rs11123153 | 0.82[ASN][1000 genomes] |
| rs11893071 | 0.89[ASN][1000 genomes] |
| rs12467810 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12467847 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12468164 | 0.83[ASN][1000 genomes] |
| rs12471839 | 0.89[ASN][1000 genomes] |
| rs12617864 | 0.88[ASN][1000 genomes] |
| rs12711745 | 0.84[ASN][1000 genomes] |
| rs12987491 | 0.92[ASN][1000 genomes] |
| rs2068777 | 0.84[ASN][1000 genomes] |
| rs2708931 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2708932 | 0.92[ASN][1000 genomes] |
| rs2723163 | 0.84[ASN][1000 genomes] |
| rs2723197 | 0.83[ASN][1000 genomes] |
| rs4077216 | 0.90[ASN][1000 genomes] |
| rs4254516 | 0.83[ASN][1000 genomes] |
| rs4387792 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4538207 | 0.84[ASN][1000 genomes] |
| rs6716380 | 0.89[ASN][1000 genomes] |
| rs6723582 | 0.89[ASN][1000 genomes] |
| rs6747618 | 0.82[ASN][1000 genomes] |
| rs7557537 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532471 | chr2:113682449-113862981 | ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv997348 | chr2:113688093-113986508 | Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:113691000-113693000 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
| 2 | chr2:113691400-113692200 | Weak transcription | Fetal Intestine Small | intestine |
