Variant report

Variant	rs2723163
Chromosome Location	chr2:113694339-113694340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113670809..113673681-chr2:113692712..113695709,2	MCF-7	breast:
2	chr2:113692325..113694742-chr2:113763398..113765744,2	K562	blood:

Variant related genes	Relation type
ENSG00000125571	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10178396	0.95[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10188765	0.83[ASN][1000 genomes]
rs10199311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10221977	0.99[ASN][1000 genomes]
rs10864908	0.96[ASN][1000 genomes]
rs11123153	0.96[ASN][1000 genomes]
rs11687403	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11893071	0.90[ASN][1000 genomes]
rs12468164	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12471839	0.90[ASN][1000 genomes]
rs12617864	0.90[ASN][1000 genomes]
rs12711745	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12987491	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2068777	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2708931	0.91[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs2708932	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2723197	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3811042	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4077216	0.92[ASN][1000 genomes]
rs4254516	0.98[ASN][1000 genomes]
rs4364030	0.84[CEU][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4387792	0.84[ASN][1000 genomes]
rs4538207	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4848309	0.84[ASN][1000 genomes]
rs4849132	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6716380	0.90[ASN][1000 genomes]
rs6723582	0.90[ASN][1000 genomes]
rs6735589	0.90[ASN][1000 genomes]
rs6747618	0.95[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7557537	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7559466	0.80[JPT][hapmap]
rs7578034	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7580877	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs879710	0.81[ASN][1000 genomes]
rs879711	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	esv2750599	chr2:113693400-113694435	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113693400-113695800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr2:113693600-113694400	Flanking Active TSS	K562	blood
3	chr2:113694000-113694400	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr2:113694000-113699200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr2:113694200-113696600	Weak transcription	NH-A	brain

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