Variant report

Variant	rs4077216
Chromosome Location	chr2:113696594-113696595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113694655..113699559-chr2:113699730..113703257,4	MCF-7	breast:
2	chr2:113695165..113698377-chr2:113699884..113701948,3	K562	blood:
3	chr2:113695796..113697897-chr2:113704279..113705804,2	K562	blood:
4	chr2:113672670..113675294-chr2:113694473..113696663,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IL37-1	chr2:113696552-113696600	XLOC_001630

Variant related genes	Relation type
ENSG00000125571	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10178396	0.92[ASN][1000 genomes]
rs10199311	0.92[ASN][1000 genomes]
rs10221977	0.92[ASN][1000 genomes]
rs10864908	0.91[ASN][1000 genomes]
rs11123151	0.85[AMR][1000 genomes]
rs11123153	0.91[ASN][1000 genomes]
rs11690185	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11696039	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11893071	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12105482	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12464758	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12465526	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12466604	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12466653	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12466697	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12468164	0.90[ASN][1000 genomes]
rs12470439	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12471839	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12477661	0.80[AMR][1000 genomes]
rs12479173	0.81[AMR][1000 genomes]
rs12614316	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12614988	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12617864	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12618418	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12623837	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12711745	0.92[ASN][1000 genomes]
rs12987491	0.83[ASN][1000 genomes]
rs12993351	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12995439	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13021862	0.81[AMR][1000 genomes]
rs13026837	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1317913	0.81[AMR][1000 genomes]
rs2068777	0.92[ASN][1000 genomes]
rs2708931	0.99[ASN][1000 genomes]
rs2708932	0.83[ASN][1000 genomes]
rs2723163	0.92[ASN][1000 genomes]
rs34027384	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34899562	0.81[AMR][1000 genomes]
rs4254516	0.92[ASN][1000 genomes]
rs4387792	0.90[ASN][1000 genomes]
rs4538207	0.92[ASN][1000 genomes]
rs4848309	0.90[ASN][1000 genomes]
rs58788639	0.80[AMR][1000 genomes]
rs66591921	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6705432	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6716380	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6720230	0.80[AMR][1000 genomes]
rs6722962	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6723197	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6723582	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6733001	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6733003	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6735589	0.84[ASN][1000 genomes]
rs6747618	0.91[ASN][1000 genomes]
rs67995749	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7557537	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv979388	chr2:113696105-113705504	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113694000-113699200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr2:113694200-113696600	Weak transcription	NH-A	brain
3	chr2:113695800-113697600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr2:113696000-113696800	Enhancers	Gastric	stomach
5	chr2:113696000-113697400	Enhancers	HMEC	breast
6	chr2:113696200-113696800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr2:113696200-113697000	Flanking Active TSS	Liver	Liver
8	chr2:113696400-113696600	Enhancers	K562	blood
9	chr2:113696400-113697200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:113696400-113697600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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