Variant report

Variant	rs11123151
Chromosome Location	chr2:113668005-113668006
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr2:113667650-113668246	HepG2	liver:	n/a	n/a
2	FOXA2	chr2:113667715-113668059	HepG2	liver:	n/a	n/a
3	EP300	chr2:113667674-113668153	HepG2	liver:	n/a	n/a
4	FOXA1	chr2:113667724-113668151	HepG2	liver:	n/a	n/a
5	FOXA1	chr2:113667623-113668260	HepG2	liver:	n/a	n/a
6	FOXA1	chr2:113667672-113668118	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
IL37	TF binding region

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1143623	0.90[AMR][1000 genomes]
rs1143625	0.89[AMR][1000 genomes]
rs11690185	0.91[AMR][1000 genomes]
rs11690539	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11690879	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11696039	0.88[AMR][1000 genomes]
rs11893071	0.89[AMR][1000 genomes]
rs12053091	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12105482	0.88[AMR][1000 genomes]
rs12464758	0.87[AMR][1000 genomes]
rs12465526	0.87[AMR][1000 genomes]
rs12466604	0.87[AMR][1000 genomes]
rs12466653	0.87[AMR][1000 genomes]
rs12466697	0.89[AMR][1000 genomes]
rs12470439	0.86[AMR][1000 genomes]
rs12471839	0.86[AMR][1000 genomes]
rs12472089	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12477661	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12479173	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12614316	0.87[AMR][1000 genomes]
rs12614988	0.87[AMR][1000 genomes]
rs12617864	0.89[AMR][1000 genomes]
rs12618418	0.90[AMR][1000 genomes]
rs12621220	0.92[AMR][1000 genomes]
rs12623837	0.89[AMR][1000 genomes]
rs12993351	0.87[AMR][1000 genomes]
rs12995439	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs13008855	0.91[AMR][1000 genomes]
rs13019347	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13021862	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13026837	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1317913	0.81[AMR][1000 genomes]
rs2723152	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34027384	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs34899562	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35520189	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4077216	0.85[AMR][1000 genomes]
rs58788639	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66591921	0.88[AMR][1000 genomes]
rs6705432	0.87[AMR][1000 genomes]
rs6716380	0.89[AMR][1000 genomes]
rs6720230	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6722962	0.87[AMR][1000 genomes]
rs6723197	0.87[AMR][1000 genomes]
rs6723582	0.86[AMR][1000 genomes]
rs6733001	0.87[AMR][1000 genomes]
rs6733003	0.87[AMR][1000 genomes]
rs67721272	0.93[AMR][1000 genomes]
rs67995749	0.87[AMR][1000 genomes]
rs71414699	0.84[AMR][1000 genomes]
rs72825577	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961338	chr2:113657963-113691422	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113664600-113668400	Weak transcription	NHEK	skin
2	chr2:113664800-113668200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:113664800-113678000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:113665000-113668400	Weak transcription	HMEC	breast
5	chr2:113667000-113668400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:113667200-113668600	Enhancers	HepG2	liver
7	chr2:113667600-113668400	Enhancers	Brain Germinal Matrix	brain

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