Variant report

Variant	rs11690539
Chromosome Location	chr2:113658015-113658016
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113656283..113658369-chr2:113658759..113661477,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11123151	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1143623	0.88[AMR][1000 genomes]
rs1143625	0.87[AMR][1000 genomes]
rs11690185	0.83[AMR][1000 genomes]
rs11690879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11696039	0.82[AMR][1000 genomes]
rs11893071	0.83[AMR][1000 genomes]
rs12053091	0.91[AMR][1000 genomes]
rs12464758	0.81[AMR][1000 genomes]
rs12465526	0.81[AMR][1000 genomes]
rs12466604	0.81[AMR][1000 genomes]
rs12466653	0.81[AMR][1000 genomes]
rs12466697	0.81[AMR][1000 genomes]
rs12471839	0.82[AMR][1000 genomes]
rs12472089	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12477661	0.92[AMR][1000 genomes]
rs12479173	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12614316	0.81[AMR][1000 genomes]
rs12614988	0.81[AMR][1000 genomes]
rs12617864	0.83[AMR][1000 genomes]
rs12618418	0.82[AMR][1000 genomes]
rs12621220	0.90[AMR][1000 genomes]
rs12623837	0.83[AMR][1000 genomes]
rs12993351	0.81[AMR][1000 genomes]
rs12995439	0.82[AMR][1000 genomes]
rs13008855	0.89[AMR][1000 genomes]
rs13019347	0.90[ASN][1000 genomes]
rs13021862	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13026837	0.82[AMR][1000 genomes]
rs1317913	0.81[AMR][1000 genomes]
rs2723152	0.88[AMR][1000 genomes]
rs34027384	0.83[AMR][1000 genomes]
rs34899562	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35520189	0.89[AMR][1000 genomes]
rs58788639	0.92[AMR][1000 genomes]
rs6705432	0.81[AMR][1000 genomes]
rs6716380	0.83[AMR][1000 genomes]
rs6720230	0.92[AMR][1000 genomes]
rs6722962	0.81[AMR][1000 genomes]
rs6723197	0.81[AMR][1000 genomes]
rs6733001	0.81[AMR][1000 genomes]
rs6733003	0.81[AMR][1000 genomes]
rs67721272	0.91[AMR][1000 genomes]
rs67995749	0.81[AMR][1000 genomes]
rs71414699	0.82[AMR][1000 genomes]
rs72825577	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961338	chr2:113657963-113691422	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113655200-113659800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:113657400-113660600	Enhancers	Fetal Intestine Large	intestine
3	chr2:113657400-113660800	Enhancers	Fetal Intestine Small	intestine

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