Variant report

Variant	rs13008855
Chromosome Location	chr2:113609568-113609569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:113609558-113609573	Gliobla	brain:	n/a	n/a
2	EP300	chr2:113609538-113609667	K562	blood:	n/a	n/a
3	ZNF384	chr2:113609364-113609575	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr2:113609544-113609594	SK-N-SH	brain:	n/a
2	chr2:113609544-113609594	AG10803	skin:	n/a
3	chr2:113609544-113609594	SK-N-SH_RA	brain:	n/a
4	chr2:113609544-113609594	HRCEpiC	kidney:	n/a
5	chr2:113609544-113609594	AG09319	gingival:	n/a
6	chr2:113609544-113609594	HIPEpiC	eye:	n/a
7	chr2:113609544-113609594	HCPEpiC	choroid plexus:	n/a
8	chr2:113609544-113609594	SK-N-MC	brain:	n/a
9	chr2:113609544-113609594	HCM	heart:	n/a
10	chr2:113609544-113609594	HCF	heart:	n/a
11	chr2:113609544-113609594	BE2_C	brain:	n/a
12	chr2:113609544-113609594	HRE	kidney:	n/a
13	chr2:113609544-113609594	NHBE	bronchial:	n/a
14	chr2:113609544-113609594	GM12878	blood:	n/a
15	chr2:113609544-113609594	NH-A	brain:	n/a
16	chr2:113609544-113609594	GM19239	blood:	n/a
17	chr2:113609544-113609594	AG09309	skin:	n/a
18	chr2:113609544-113609594	Hela-S3	cervix:	n/a
19	chr2:113609544-113609594	NT2-D1	testis:	n/a
20	chr2:113609544-113609594	BJ	skin:	n/a
21	chr2:113609544-113609594	HL-60	blood:	n/a
22	chr2:113609544-113609594	SAEC	small airway:	n/a
23	chr2:113609544-113609594	HMEC	breast:	n/a
24	chr2:113609544-113609594	RPTEC	kidney:	n/a
25	chr2:113609544-113609594	NB4	blood:	n/a
26	chr2:113609544-113609594	T-47D	breast:	n/a
27	chr2:113609544-113609594	U87	brain:	n/a
28	chr2:113609544-113609594	LNCaP	prostate:	n/a
29	chr2:113609544-113609594	ECC-1	luminal epithelium:	n/a
30	chr2:113609544-113609594	SKMC	muscle:	n/a
31	chr2:113609544-113609594	ProgFib	skin:	n/a
32	chr2:113609544-113609594	ovcar-3	ovarian:	n/a
33	chr2:113609544-113609594	MCF-7	breast:	n/a
34	chr2:113609544-113609594	HEEpiC	esophagus:	n/a
35	chr2:113609544-113609594	K562	blood:	n/a
36	chr2:113609544-113609594	PANC-1	pancreas:	n/a
37	chr2:113609544-113609594	CMK	blood:	n/a
38	chr2:113609544-113609594	AG04450	lung:	fetal
39	chr2:113609544-113609594	Jurkat	blood:	n/a
40	chr2:113609544-113609594	IMR90	lung:	fetal
41	chr2:113609544-113609594	MCF10A-Er-Src	breast:	n/a
42	chr2:113609544-113609594	HRPEpiC	eye:	n/a
43	chr2:113609544-113609594	AG04449	skin:	fetal
44	chr2:113609544-113609594	HAEpiC	amniotic membrane:	n/a
45	chr2:113609544-113609594	HUVEC	blood vessel:	n/a
46	chr2:113609544-113609594	GM12892	blood:	n/a
47	chr2:113609544-113609594	A549	lung:	n/a
48	chr2:113609544-113609594	HNPCEpiC	eye:	n/a
49	chr2:113609544-113609594	GM12891	blood:	n/a
50	chr2:113609544-113609594	Caco-2	colon:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113590769..113594416-chr2:113606347..113611014,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000180152	TF binding region
ENSG00000180152	CpG island
ENSG00000125538	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10200192	1.00[YRI][hapmap]
rs11123151	0.91[AMR][1000 genomes]
rs1143623	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1143625	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11690185	1.00[ASW][hapmap];0.91[MEX][hapmap];0.83[AMR][1000 genomes]
rs11690539	0.89[AMR][1000 genomes]
rs11690879	0.89[AMR][1000 genomes]
rs11893071	0.81[AMR][1000 genomes]
rs12053091	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12466697	0.81[AMR][1000 genomes]
rs12472089	0.90[AMR][1000 genomes]
rs12477661	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12479173	0.93[AMR][1000 genomes]
rs12617864	0.81[AMR][1000 genomes]
rs12618418	0.82[AMR][1000 genomes]
rs12621220	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12623837	0.81[AMR][1000 genomes]
rs12995439	0.82[AMR][1000 genomes]
rs13019249	1.00[YRI][hapmap]
rs13021862	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13026263	1.00[YRI][hapmap]
rs13026837	0.82[AMR][1000 genomes]
rs17649681	1.00[YRI][hapmap]
rs2071373	1.00[YRI][hapmap]
rs2723152	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34027384	0.83[AMR][1000 genomes]
rs34899562	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35520189	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3783521	1.00[YRI][hapmap]
rs3783526	1.00[YRI][hapmap]
rs3811040	1.00[YRI][hapmap]
rs4848298	1.00[YRI][hapmap]
rs4849115	1.00[YRI][hapmap]
rs58788639	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6712572	1.00[YRI][hapmap]
rs6716380	0.81[AMR][1000 genomes]
rs6720230	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6735739	0.84[CEU][hapmap]
rs67721272	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71414699	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72825577	0.90[AMR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13008855	IL1B	Cis_1M	lymphoblastoid	RTeQTL
rs13008855	PAX8	cis	lymphoblastoid	seeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113605600-113610000	Enhancers	H1 Cell Line	embryonic stem cell
2	chr2:113605800-113610000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr2:113607200-113611000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:113607600-113609600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:113607800-113609800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:113608000-113609600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr2:113608200-113610200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr2:113608800-113609600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr2:113609000-113610200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr2:113609200-113609600	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr2:113609400-113609600	Active TSS	K562	blood
12	chr2:113609400-113610200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr2:113609400-113610200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell

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