Variant report

Variant	rs1143625
Chromosome Location	chr2:113595359-113595360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11123151	0.89[AMR][1000 genomes]
rs1143623	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11690185	0.81[AMR][1000 genomes]
rs11690539	0.87[AMR][1000 genomes]
rs11690879	0.87[AMR][1000 genomes]
rs12053091	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12472089	0.88[AMR][1000 genomes]
rs12477661	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12479173	0.91[AMR][1000 genomes]
rs12621220	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13008855	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13021862	0.93[AMR][1000 genomes]
rs2723152	0.84[AMR][1000 genomes]
rs34027384	0.81[AMR][1000 genomes]
rs34899562	0.93[AMR][1000 genomes]
rs35520189	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58788639	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6720230	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67721272	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71414699	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72825577	0.88[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1143625	IL1B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113590600-113596000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr2:113591200-113600200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:113592800-113597200	Weak transcription	Liver	Liver
4	chr2:113593800-113595400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:113594000-113595400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr2:113594000-113598000	Weak transcription	Stomach Mucosa	stomach
7	chr2:113594400-113596000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:113594400-113596600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr2:113594400-113597200	Enhancers	Primary B cells from cord blood	blood
10	chr2:113594400-113598200	Enhancers	HMEC	breast
11	chr2:113594400-113600200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr2:113594400-113601200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr2:113594600-113595400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:113594600-113596400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:113594600-113597400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr2:113594800-113595800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr2:113595000-113596000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr2:113595000-113596800	Weak transcription	HUVEC	blood vessel
19	chr2:113595000-113597000	Weak transcription	NHDF-Ad	bronchial
20	chr2:113595000-113597600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr2:113595000-113597600	Weak transcription	Adipose Nuclei	Adipose
22	chr2:113595000-113599400	Enhancers	Primary hematopoietic stem cells	blood
23	chr2:113595000-113600200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr2:113595200-113596400	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr2:113595200-113596600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr2:113595200-113596600	Weak transcription	GM12878-XiMat	blood
27	chr2:113595200-113596800	Weak transcription	NHEK	skin
28	chr2:113595200-113597200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr2:113595200-113597400	Weak transcription	Spleen	Spleen
30	chr2:113595200-113597600	Weak transcription	Osteobl	bone

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