Variant report

Variant	rs35520189
Chromosome Location	chr2:113619230-113619231
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113618582..113620673-chr2:113622972..113625537,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11123151	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1143623	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1143625	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11690185	0.83[AMR][1000 genomes]
rs11690539	0.89[AMR][1000 genomes]
rs11690879	0.89[AMR][1000 genomes]
rs11893071	0.81[AMR][1000 genomes]
rs12053091	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12466697	0.81[AMR][1000 genomes]
rs12472089	0.90[AMR][1000 genomes]
rs12477661	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12479173	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12617864	0.81[AMR][1000 genomes]
rs12618418	0.82[AMR][1000 genomes]
rs12621220	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12623837	0.81[AMR][1000 genomes]
rs12995439	0.82[AMR][1000 genomes]
rs13008855	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13021862	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13026837	0.82[AMR][1000 genomes]
rs2723152	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34027384	0.83[AMR][1000 genomes]
rs34899562	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58788639	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6716380	0.81[AMR][1000 genomes]
rs6720230	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67721272	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71414699	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72825577	0.90[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35520189	IL1B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113617200-113619400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:113618200-113620000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr2:113619200-113623600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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