Variant report

Variant	rs12053091
Chromosome Location	chr2:113610780-113610781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113590769..113594416-chr2:113606347..113611014,4	K562	blood:

Variant related genes	Relation type
ENSG00000125538	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11123151	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1143623	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1143625	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11690185	0.91[MEX][hapmap];0.85[AMR][1000 genomes]
rs11690539	0.91[AMR][1000 genomes]
rs11690879	0.91[AMR][1000 genomes]
rs11696039	0.82[AMR][1000 genomes]
rs11893071	0.83[AMR][1000 genomes]
rs12105482	0.82[AMR][1000 genomes]
rs12464758	0.81[AMR][1000 genomes]
rs12465526	0.81[AMR][1000 genomes]
rs12466604	0.81[AMR][1000 genomes]
rs12466653	0.81[AMR][1000 genomes]
rs12466697	0.83[AMR][1000 genomes]
rs12470439	0.80[AMR][1000 genomes]
rs12471839	0.82[AMR][1000 genomes]
rs12472089	0.92[AMR][1000 genomes]
rs12477661	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12479173	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12614316	0.81[AMR][1000 genomes]
rs12614988	0.81[AMR][1000 genomes]
rs12617864	0.83[AMR][1000 genomes]
rs12618418	0.84[AMR][1000 genomes]
rs12621220	1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12623837	0.83[AMR][1000 genomes]
rs12993351	0.81[AMR][1000 genomes]
rs12995439	0.84[AMR][1000 genomes]
rs13008855	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021862	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13026837	0.84[AMR][1000 genomes]
rs2466446	0.84[CEU][hapmap]
rs2723152	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34027384	0.85[AMR][1000 genomes]
rs34899562	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35520189	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58788639	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66591921	0.82[AMR][1000 genomes]
rs6705432	0.81[AMR][1000 genomes]
rs6716380	0.83[AMR][1000 genomes]
rs6720230	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6722962	0.81[AMR][1000 genomes]
rs6723197	0.81[AMR][1000 genomes]
rs6723582	0.80[AMR][1000 genomes]
rs6733001	0.81[AMR][1000 genomes]
rs6733003	0.81[AMR][1000 genomes]
rs6735739	0.80[CEU][hapmap]
rs67721272	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67995749	0.81[AMR][1000 genomes]
rs71414699	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72825577	0.92[AMR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12053091	IL1B	Cis_1M	lymphoblastoid	RTeQTL
rs12053091	PAX8	cis	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113607200-113611000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:113610200-113610800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:113610200-113611200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr2:113610600-113611000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:113610600-113613000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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