Variant report

Variant	rs58788639
Chromosome Location	chr2:113626589-113626590
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113625233..113627510-chr2:113637612..113639730,2	MCF-7	breast:
2	chr2:113624073..113627729-chr2:113629143..113631937,4	K562	blood:
3	chr2:113625681..113627663-chr2:113649211..113651985,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11123151	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1143623	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1143625	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11690185	0.86[AMR][1000 genomes]
rs11690539	0.92[AMR][1000 genomes]
rs11690879	0.92[AMR][1000 genomes]
rs11696039	0.83[AMR][1000 genomes]
rs11893071	0.84[AMR][1000 genomes]
rs12053091	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12105482	0.83[AMR][1000 genomes]
rs12464758	0.82[AMR][1000 genomes]
rs12465526	0.82[AMR][1000 genomes]
rs12466604	0.82[AMR][1000 genomes]
rs12466653	0.82[AMR][1000 genomes]
rs12466697	0.84[AMR][1000 genomes]
rs12470439	0.81[AMR][1000 genomes]
rs12471839	0.83[AMR][1000 genomes]
rs12472089	0.93[AMR][1000 genomes]
rs12477661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12479173	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12614316	0.82[AMR][1000 genomes]
rs12614988	0.82[AMR][1000 genomes]
rs12617864	0.84[AMR][1000 genomes]
rs12618418	0.85[AMR][1000 genomes]
rs12621220	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12623837	0.84[AMR][1000 genomes]
rs12993351	0.82[AMR][1000 genomes]
rs12995439	0.85[AMR][1000 genomes]
rs13008855	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13019347	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13021862	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13026837	0.85[AMR][1000 genomes]
rs2723152	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34027384	0.86[AMR][1000 genomes]
rs34899562	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35520189	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4077216	0.80[AMR][1000 genomes]
rs66591921	0.83[AMR][1000 genomes]
rs6705432	0.82[AMR][1000 genomes]
rs6716380	0.84[AMR][1000 genomes]
rs6720230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6722962	0.82[AMR][1000 genomes]
rs6723197	0.82[AMR][1000 genomes]
rs6723582	0.81[AMR][1000 genomes]
rs6733001	0.82[AMR][1000 genomes]
rs6733003	0.82[AMR][1000 genomes]
rs67721272	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67995749	0.82[AMR][1000 genomes]
rs71414699	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72825577	0.93[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs58788639	IL1B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113623600-113626800	Enhancers	Hela-S3	cervix
2	chr2:113624000-113627200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:113624200-113626800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:113624400-113628400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:113624400-113628400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:113624800-113629200	Enhancers	Stomach Mucosa	stomach
7	chr2:113624800-113629200	Enhancers	HMEC	breast
8	chr2:113625000-113626800	Enhancers	NHEK	skin
9	chr2:113625000-113627600	Enhancers	NHDF-Ad	bronchial
10	chr2:113625000-113629000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:113625000-113629000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:113625000-113629200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:113625000-113629800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:113625200-113627000	Enhancers	Esophagus	oesophagus
15	chr2:113625400-113626600	Weak transcription	HUVEC	blood vessel
16	chr2:113625400-113629200	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr2:113625600-113628200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr2:113625600-113628400	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr2:113625600-113629200	Enhancers	Colonic Mucosa	Colon
20	chr2:113625800-113627400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr2:113626000-113627600	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr2:113626000-113628200	Weak transcription	Gastric	stomach
23	chr2:113626000-113629000	Weak transcription	Right Atrium	heart
24	chr2:113626000-113629400	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr2:113626200-113626600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr2:113626200-113626800	Weak transcription	Lung	lung
27	chr2:113626200-113627000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr2:113626200-113628800	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr2:113626200-113634000	Weak transcription	Placenta	Placenta
30	chr2:113626400-113627000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr2:113626400-113627000	Enhancers	Left Ventricle	heart
32	chr2:113626400-113627000	Enhancers	Small Intestine	intestine
33	chr2:113626400-113627400	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr2:113626400-113627800	Enhancers	K562	blood
35	chr2:113626400-113629200	Enhancers	Primary hematopoietic stem cells	blood
36	chr2:113626400-113629400	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr2:113626400-113629400	Enhancers	Fetal Intestine Large	intestine

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