Variant report

Variant	rs13019347
Chromosome Location	chr2:113646746-113646747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11123151	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11690539	0.90[ASN][1000 genomes]
rs11690879	0.90[ASN][1000 genomes]
rs12472089	0.90[ASN][1000 genomes]
rs12477661	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12479173	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13021862	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2723152	0.90[EUR][1000 genomes]
rs34899562	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58788639	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6720230	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71414699	0.83[AMR][1000 genomes]
rs72825577	0.90[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113639200-113647800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:113640400-113647800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:113643600-113647800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:113643600-113648000	Weak transcription	HMEC	breast
5	chr2:113644400-113647800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:113644400-113647800	Weak transcription	NHEK	skin
7	chr2:113644600-113647800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:113646200-113648800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr2:113646400-113648800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr2:113646400-113648800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr2:113646600-113647200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links