Variant report

Variant	rs4387792
Chromosome Location	chr2:113691288-113691289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10178396	0.82[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs10199311	0.87[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs10221977	0.83[ASN][1000 genomes]
rs10864908	0.82[ASN][1000 genomes]
rs11123153	0.82[ASN][1000 genomes]
rs11893071	0.89[ASN][1000 genomes]
rs12467810	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12467847	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12468164	0.83[ASN][1000 genomes]
rs12471839	0.89[ASN][1000 genomes]
rs12617864	0.88[ASN][1000 genomes]
rs12711745	0.84[ASN][1000 genomes]
rs12987491	0.92[ASN][1000 genomes]
rs2068777	0.87[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2708925	0.84[ASW][hapmap];0.93[YRI][hapmap]
rs2708931	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2708932	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2723163	0.87[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2723196	0.84[ASW][hapmap];0.96[YRI][hapmap]
rs2723197	0.83[ASN][1000 genomes]
rs2723201	0.92[YRI][hapmap]
rs2723202	0.92[YRI][hapmap]
rs4077216	0.90[ASN][1000 genomes]
rs4254516	0.83[ASN][1000 genomes]
rs4538207	0.84[ASN][1000 genomes]
rs4848309	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6716380	0.89[ASN][1000 genomes]
rs6723582	0.89[ASN][1000 genomes]
rs6747618	0.82[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs7557537	0.84[ASN][1000 genomes]
rs7577574	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961338	chr2:113657963-113691422	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113691000-113691400	Enhancers	Fetal Intestine Small	intestine
2	chr2:113691000-113693000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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