Variant report

Variant	rs3811042
Chromosome Location	chr2:113670834-113670835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10199311	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11687403	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12468164	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12711745	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12987491	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12990810	0.92[ASN][1000 genomes]
rs2708919	0.92[ASN][1000 genomes]
rs2708932	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2723149	0.92[ASN][1000 genomes]
rs2723151	0.92[ASN][1000 genomes]
rs2723163	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2723197	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4364030	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4538207	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4849132	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7557537	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7578034	0.81[AMR][1000 genomes]
rs7580877	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961338	chr2:113657963-113691422	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113664800-113678000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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