Variant report

Variant	rs2723149
Chromosome Location	chr2:113643628-113643629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10864907	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11683383	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11687403	0.99[ASN][1000 genomes]
rs11695077	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12990810	0.99[ASN][1000 genomes]
rs2708919	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723151	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3811042	0.92[ASN][1000 genomes]
rs4364030	0.92[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113632800-113644400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:113639200-113644400	Enhancers	NHEK	skin
3	chr2:113639200-113647800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr2:113639600-113645400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr2:113640400-113645400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr2:113640400-113647800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:113642800-113644800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr2:113643000-113644600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr2:113643200-113644200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:113643200-113645200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:113643200-113645600	Weak transcription	GM12878-XiMat	blood
12	chr2:113643200-113645800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr2:113643400-113645200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:113643600-113645200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr2:113643600-113647800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:113643600-113648000	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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