Variant report

Variant	rs10865312
Chromosome Location	chr2:59523593-59523594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10166053	0.82[EUR][1000 genomes]
rs10190473	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11125786	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11689998	0.80[EUR][1000 genomes]
rs11691103	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11886801	0.80[EUR][1000 genomes]
rs11902415	0.80[EUR][1000 genomes]
rs13028418	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1344464	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2418491	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834170	chr2:59436676-59604794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv582099	chr2:59494725-59563744	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:59522000-59523600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr2:59522000-59524200	Enhancers	Fetal Heart	heart
3	chr2:59522200-59524400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:59522400-59523800	Enhancers	Fetal Lung	lung
5	chr2:59522400-59525400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:59522600-59523600	Enhancers	Fetal Intestine Small	intestine
7	chr2:59522800-59523600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr2:59523000-59523800	Enhancers	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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