Variant report
| Variant | rs13028418 |
|---|---|
| Chromosome Location | chr2:59546095-59546096 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10166053 | 0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10168814 | 0.82[EUR][1000 genomes] |
| rs10190473 | 0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10192391 | 0.81[EUR][1000 genomes] |
| rs10203625 | 0.84[EUR][1000 genomes] |
| rs10865312 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11125786 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11679165 | 0.81[EUR][1000 genomes] |
| rs11689998 | 0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11691103 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11884634 | 0.83[EUR][1000 genomes] |
| rs11886801 | 0.83[EUR][1000 genomes] |
| rs11901069 | 0.83[EUR][1000 genomes] |
| rs11902415 | 0.83[EUR][1000 genomes] |
| rs12478341 | 0.83[EUR][1000 genomes] |
| rs1344461 | 0.81[EUR][1000 genomes] |
| rs1344464 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2192570 | 0.83[EUR][1000 genomes] |
| rs2418491 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs35971179 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834170 | chr2:59436676-59604794 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv582099 | chr2:59494725-59563744 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv1003668 | chr2:59523642-59592144 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:59544800-59548400 | Weak transcription | Dnd41 | blood |
