Variant report

Variant	rs11902415
Chromosome Location	chr2:59489616-59489617
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10865312	0.80[EUR][1000 genomes]
rs11125786	0.82[EUR][1000 genomes]
rs11691103	0.83[EUR][1000 genomes]
rs11886801	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13028418	0.83[EUR][1000 genomes]
rs1344464	0.82[EUR][1000 genomes]
rs1861148	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2058585	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2418491	0.81[EUR][1000 genomes]
rs4630753	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7577786	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834170	chr2:59436676-59604794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:59484000-59493600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr2:59487800-59493000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links