Variant report

Variant	rs7577786
Chromosome Location	chr2:59485685-59485686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11886801	0.94[ASN][1000 genomes]
rs11902415	0.94[ASN][1000 genomes]
rs1861148	0.85[ASN][1000 genomes]
rs2192562	0.81[CEU][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs4630753	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834170	chr2:59436676-59604794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:59484000-59485800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:59484000-59485800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr2:59484000-59493600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:59485600-59486600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr2:59485600-59487800	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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